Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00072

Experiment: monoculture; Experiment A, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00071 and MIT1002_00072 are separated by 45 nucleotidesMIT1002_00072 and MIT1002_00073 are separated by 103 nucleotidesMIT1002_00073 and MIT1002_00074 are separated by 264 nucleotidesMIT1002_00074 and MIT1002_00075 are separated by 17 nucleotides MIT1002_00071: MIT1002_00071 - ATP-dependent DNA helicase rep, at 74,894 to 76,909 _00071 MIT1002_00072: MIT1002_00072 - Bacteriophytochrome cph2, at 76,955 to 79,555 _00072 MIT1002_00073: MIT1002_00073 - Cytochrome c5, at 79,659 to 80,066 _00073 MIT1002_00074: MIT1002_00074 - tRNA-Arg, at 80,331 to 80,407 _00074 MIT1002_00075: MIT1002_00075 - putative DNA-binding transcriptional regulator, at 80,425 to 81,618 _00075 Position (kb) 76 77 78 79 80Strain fitness (log2 ratio) -1 0 1 2 3at 76.976 kb on + strandat 77.060 kb on + strandat 77.060 kb on + strandat 77.095 kb on - strandat 77.103 kb on - strandat 77.105 kb on + strandat 77.105 kb on + strandat 77.113 kb on - strandat 77.140 kb on - strandat 77.150 kb on - strandat 77.150 kb on - strandat 77.185 kb on + strandat 77.193 kb on + strandat 77.252 kb on + strand, within MIT1002_00072at 77.479 kb on + strand, within MIT1002_00072at 77.479 kb on - strand, within MIT1002_00072at 77.497 kb on + strand, within MIT1002_00072at 77.497 kb on + strand, within MIT1002_00072at 77.505 kb on - strand, within MIT1002_00072at 77.524 kb on + strand, within MIT1002_00072at 77.531 kb on + strand, within MIT1002_00072at 77.552 kb on - strand, within MIT1002_00072at 77.578 kb on - strand, within MIT1002_00072at 77.580 kb on + strand, within MIT1002_00072at 77.580 kb on + strand, within MIT1002_00072at 77.588 kb on - strand, within MIT1002_00072at 77.612 kb on - strand, within MIT1002_00072at 77.713 kb on + strand, within MIT1002_00072at 77.862 kb on + strand, within MIT1002_00072at 78.053 kb on + strand, within MIT1002_00072at 78.074 kb on + strand, within MIT1002_00072at 78.102 kb on - strand, within MIT1002_00072at 78.131 kb on + strand, within MIT1002_00072at 78.149 kb on - strand, within MIT1002_00072at 78.167 kb on - strand, within MIT1002_00072at 78.169 kb on + strand, within MIT1002_00072at 78.169 kb on + strand, within MIT1002_00072at 78.169 kb on + strand, within MIT1002_00072at 78.218 kb on + strand, within MIT1002_00072at 78.248 kb on - strand, within MIT1002_00072at 78.350 kb on + strand, within MIT1002_00072at 78.366 kb on + strand, within MIT1002_00072at 78.437 kb on + strand, within MIT1002_00072at 78.454 kb on + strand, within MIT1002_00072at 78.464 kb on - strand, within MIT1002_00072at 78.524 kb on - strand, within MIT1002_00072at 78.533 kb on + strand, within MIT1002_00072at 78.533 kb on + strand, within MIT1002_00072at 78.533 kb on + strand, within MIT1002_00072at 78.533 kb on + strand, within MIT1002_00072at 78.541 kb on - strand, within MIT1002_00072at 78.541 kb on - strand, within MIT1002_00072at 78.541 kb on - strand, within MIT1002_00072at 78.541 kb on - strand, within MIT1002_00072at 78.541 kb on - strand, within MIT1002_00072at 78.584 kb on + strand, within MIT1002_00072at 78.586 kb on + strand, within MIT1002_00072at 78.592 kb on - strand, within MIT1002_00072at 78.592 kb on - strand, within MIT1002_00072at 78.599 kb on - strand, within MIT1002_00072at 78.600 kb on + strand, within MIT1002_00072at 78.602 kb on - strand, within MIT1002_00072at 78.646 kb on + strand, within MIT1002_00072at 78.649 kb on - strand, within MIT1002_00072at 78.669 kb on - strand, within MIT1002_00072at 78.768 kb on - strand, within MIT1002_00072at 78.792 kb on + strand, within MIT1002_00072at 78.926 kb on + strand, within MIT1002_00072at 79.010 kb on + strand, within MIT1002_00072at 79.040 kb on + strand, within MIT1002_00072at 79.048 kb on - strand, within MIT1002_00072at 79.048 kb on - strand, within MIT1002_00072at 79.075 kb on - strand, within MIT1002_00072at 79.077 kb on - strand, within MIT1002_00072at 79.084 kb on - strand, within MIT1002_00072at 79.117 kb on + strand, within MIT1002_00072at 79.117 kb on + strand, within MIT1002_00072at 79.144 kb on - strand, within MIT1002_00072at 79.213 kb on + strand, within MIT1002_00072at 79.395 kb on + strandat 79.423 kb on + strandat 79.423 kb on + strandat 79.431 kb on - strandat 79.447 kb on + strandat 79.463 kb on - strandat 79.498 kb on + strandat 79.506 kb on - strandat 79.721 kb on - strand, within MIT1002_00073at 79.742 kb on + strand, within MIT1002_00073at 79.742 kb on + strand, within MIT1002_00073at 79.798 kb on - strand, within MIT1002_00073at 79.903 kb on - strand, within MIT1002_00073at 80.116 kb on - strandat 80.166 kb on + strandat 80.230 kb on - strandat 80.235 kb on - strandat 80.257 kb on + strandat 80.259 kb on + strandat 80.301 kb on + strandat 80.351 kb on - strand, within MIT1002_00074at 80.351 kb on - strand, within MIT1002_00074at 80.365 kb on + strand, within MIT1002_00074at 80.368 kb on - strand, within MIT1002_00074at 80.376 kb on + strand, within MIT1002_00074at 80.376 kb on + strand, within MIT1002_00074at 80.400 kb on - strandat 80.400 kb on - strandat 80.432 kb on + strandat 80.441 kb on - strandat 80.442 kb on + strandat 80.456 kb on + strandat 80.512 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
remove
76,976 + +3.2
77,060 + +2.8
77,060 + +2.5
77,095 - +2.5
77,103 - +2.2
77,105 + +1.8
77,105 + +2.5
77,113 - +2.8
77,140 - +2.2
77,150 - +3.3
77,150 - +2.6
77,185 + +2.7
77,193 + +1.5
77,252 + MIT1002_00072 0.11 +2.1
77,479 + MIT1002_00072 0.20 +1.0
77,479 - MIT1002_00072 0.20 +2.6
77,497 + MIT1002_00072 0.21 +2.7
77,497 + MIT1002_00072 0.21 +2.3
77,505 - MIT1002_00072 0.21 +2.5
77,524 + MIT1002_00072 0.22 +2.0
77,531 + MIT1002_00072 0.22 +2.6
77,552 - MIT1002_00072 0.23 +2.2
77,578 - MIT1002_00072 0.24 +1.9
77,580 + MIT1002_00072 0.24 +2.1
77,580 + MIT1002_00072 0.24 +3.3
77,588 - MIT1002_00072 0.24 +2.6
77,612 - MIT1002_00072 0.25 +2.8
77,713 + MIT1002_00072 0.29 +1.7
77,862 + MIT1002_00072 0.35 +2.9
78,053 + MIT1002_00072 0.42 +2.5
78,074 + MIT1002_00072 0.43 +1.9
78,102 - MIT1002_00072 0.44 +2.6
78,131 + MIT1002_00072 0.45 +3.0
78,149 - MIT1002_00072 0.46 +2.1
78,167 - MIT1002_00072 0.47 +0.3
78,169 + MIT1002_00072 0.47 +2.0
78,169 + MIT1002_00072 0.47 +2.3
78,169 + MIT1002_00072 0.47 +2.7
78,218 + MIT1002_00072 0.49 +2.1
78,248 - MIT1002_00072 0.50 +2.6
78,350 + MIT1002_00072 0.54 +2.3
78,366 + MIT1002_00072 0.54 +1.1
78,437 + MIT1002_00072 0.57 +2.7
78,454 + MIT1002_00072 0.58 +2.3
78,464 - MIT1002_00072 0.58 +2.3
78,524 - MIT1002_00072 0.60 +1.6
78,533 + MIT1002_00072 0.61 +0.6
78,533 + MIT1002_00072 0.61 +2.2
78,533 + MIT1002_00072 0.61 +3.3
78,533 + MIT1002_00072 0.61 +2.3
78,541 - MIT1002_00072 0.61 +2.5
78,541 - MIT1002_00072 0.61 +1.9
78,541 - MIT1002_00072 0.61 +2.5
78,541 - MIT1002_00072 0.61 +1.9
78,541 - MIT1002_00072 0.61 +3.2
78,584 + MIT1002_00072 0.63 +2.3
78,586 + MIT1002_00072 0.63 +1.9
78,592 - MIT1002_00072 0.63 +3.5
78,592 - MIT1002_00072 0.63 +2.0
78,599 - MIT1002_00072 0.63 +1.7
78,600 + MIT1002_00072 0.63 +2.6
78,602 - MIT1002_00072 0.63 +2.1
78,646 + MIT1002_00072 0.65 +2.1
78,649 - MIT1002_00072 0.65 +1.5
78,669 - MIT1002_00072 0.66 +2.2
78,768 - MIT1002_00072 0.70 +2.6
78,792 + MIT1002_00072 0.71 +0.1
78,926 + MIT1002_00072 0.76 +3.1
79,010 + MIT1002_00072 0.79 +2.1
79,040 + MIT1002_00072 0.80 +2.0
79,048 - MIT1002_00072 0.80 +3.1
79,048 - MIT1002_00072 0.80 +2.2
79,075 - MIT1002_00072 0.82 +2.1
79,077 - MIT1002_00072 0.82 +1.5
79,084 - MIT1002_00072 0.82 +2.3
79,117 + MIT1002_00072 0.83 +2.2
79,117 + MIT1002_00072 0.83 +3.4
79,144 - MIT1002_00072 0.84 +1.8
79,213 + MIT1002_00072 0.87 +1.8
79,395 + +2.6
79,423 + +1.5
79,423 + +2.7
79,431 - +2.7
79,447 + +2.8
79,463 - +2.1
79,498 + +2.0
79,506 - +1.5
79,721 - MIT1002_00073 0.15 -0.8
79,742 + MIT1002_00073 0.20 -0.7
79,742 + MIT1002_00073 0.20 +0.1
79,798 - MIT1002_00073 0.34 -0.3
79,903 - MIT1002_00073 0.60 -1.3
80,116 - -0.1
80,166 + +0.6
80,230 - -0.7
80,235 - +0.7
80,257 + +3.0
80,259 + -0.1
80,301 + -0.6
80,351 - MIT1002_00074 0.26 -0.6
80,351 - MIT1002_00074 0.26 -1.3
80,365 + MIT1002_00074 0.44 -1.5
80,368 - MIT1002_00074 0.48 -0.7
80,376 + MIT1002_00074 0.58 -0.1
80,376 + MIT1002_00074 0.58 -0.2
80,400 - -1.3
80,400 - -1.7
80,432 + +1.7
80,441 - +0.0
80,442 + +1.0
80,456 + -0.0
80,512 + -0.8

Or see this region's nucleotide sequence