Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00028

Experiment: monoculture; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00027 and MIT1002_00028 are separated by 124 nucleotidesMIT1002_00028 and MIT1002_00029 are separated by 61 nucleotidesMIT1002_00029 and MIT1002_00030 overlap by 4 nucleotides MIT1002_00027: MIT1002_00027 - Outer membrane protein W precursor, at 30,180 to 30,860 _00027 MIT1002_00028: MIT1002_00028 - Truncated BHb, at 30,985 to 31,416 _00028 MIT1002_00029: MIT1002_00029 - Shikimate dehydrogenase, at 31,478 to 32,254 _00029 MIT1002_00030: MIT1002_00030 - carnitine operon protein CaiE, at 32,251 to 32,793 _00030 Position (kb) 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 30.035 kb on - strandat 30.119 kb on - strandat 30.143 kb on - strandat 30.222 kb on - strandat 30.231 kb on + strandat 30.237 kb on + strandat 30.237 kb on + strandat 30.245 kb on - strandat 30.260 kb on - strand, within MIT1002_00027at 30.342 kb on - strand, within MIT1002_00027at 30.381 kb on + strand, within MIT1002_00027at 30.441 kb on - strand, within MIT1002_00027at 30.486 kb on - strand, within MIT1002_00027at 30.495 kb on - strand, within MIT1002_00027at 30.507 kb on + strand, within MIT1002_00027at 30.515 kb on + strand, within MIT1002_00027at 30.523 kb on - strand, within MIT1002_00027at 30.552 kb on - strand, within MIT1002_00027at 30.573 kb on - strand, within MIT1002_00027at 30.588 kb on + strand, within MIT1002_00027at 30.596 kb on - strand, within MIT1002_00027at 30.608 kb on - strand, within MIT1002_00027at 30.695 kb on - strand, within MIT1002_00027at 30.779 kb on + strand, within MIT1002_00027at 30.782 kb on + strand, within MIT1002_00027at 30.808 kb on - strandat 30.828 kb on + strandat 30.828 kb on + strandat 30.835 kb on - strandat 30.836 kb on - strandat 30.836 kb on - strandat 30.836 kb on - strandat 30.836 kb on - strandat 30.853 kb on - strandat 30.884 kb on + strandat 30.884 kb on + strandat 30.916 kb on - strandat 30.918 kb on + strandat 30.925 kb on - strandat 30.936 kb on + strandat 30.945 kb on - strandat 30.961 kb on + strandat 30.961 kb on + strandat 31.017 kb on + strandat 31.025 kb on - strandat 31.025 kb on - strandat 31.025 kb on - strandat 31.025 kb on - strandat 31.036 kb on + strand, within MIT1002_00028at 31.036 kb on + strand, within MIT1002_00028at 31.064 kb on - strand, within MIT1002_00028at 31.124 kb on + strand, within MIT1002_00028at 31.124 kb on + strand, within MIT1002_00028at 31.124 kb on + strand, within MIT1002_00028at 31.132 kb on - strand, within MIT1002_00028at 31.132 kb on - strand, within MIT1002_00028at 31.132 kb on - strand, within MIT1002_00028at 31.132 kb on - strand, within MIT1002_00028at 31.132 kb on - strand, within MIT1002_00028at 31.132 kb on - strand, within MIT1002_00028at 31.132 kb on - strand, within MIT1002_00028at 31.132 kb on - strand, within MIT1002_00028at 31.194 kb on + strand, within MIT1002_00028at 31.254 kb on - strand, within MIT1002_00028at 31.263 kb on + strand, within MIT1002_00028at 31.263 kb on + strand, within MIT1002_00028at 31.263 kb on + strand, within MIT1002_00028at 31.263 kb on + strand, within MIT1002_00028at 31.275 kb on + strand, within MIT1002_00028at 31.336 kb on + strand, within MIT1002_00028at 31.345 kb on + strand, within MIT1002_00028at 32.340 kb on + strand, within MIT1002_00030at 32.403 kb on + strand, within MIT1002_00030

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 6
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30,035 - -0.1
30,119 - +1.3
30,143 - -1.1
30,222 - -1.2
30,231 + -0.3
30,237 + +1.3
30,237 + -2.8
30,245 - +0.7
30,260 - MIT1002_00027 0.12 -1.0
30,342 - MIT1002_00027 0.24 -1.3
30,381 + MIT1002_00027 0.30 +0.0
30,441 - MIT1002_00027 0.38 -1.5
30,486 - MIT1002_00027 0.45 -0.7
30,495 - MIT1002_00027 0.46 +0.7
30,507 + MIT1002_00027 0.48 +0.7
30,515 + MIT1002_00027 0.49 -1.7
30,523 - MIT1002_00027 0.50 -1.0
30,552 - MIT1002_00027 0.55 -1.1
30,573 - MIT1002_00027 0.58 -2.2
30,588 + MIT1002_00027 0.60 -0.3
30,596 - MIT1002_00027 0.61 -1.3
30,608 - MIT1002_00027 0.63 +2.4
30,695 - MIT1002_00027 0.76 -0.6
30,779 + MIT1002_00027 0.88 -0.2
30,782 + MIT1002_00027 0.88 -1.2
30,808 - -1.0
30,828 + -1.2
30,828 + +1.4
30,835 - +0.5
30,836 - -1.1
30,836 - +0.4
30,836 - -0.3
30,836 - -0.9
30,853 - -0.4
30,884 + +2.5
30,884 + -0.5
30,916 - -1.0
30,918 + -2.2
30,925 - -2.7
30,936 + +1.1
30,945 - -0.8
30,961 + +1.3
30,961 + -0.9
31,017 + -2.0
31,025 - -1.0
31,025 - -1.9
31,025 - -1.2
31,025 - +0.2
31,036 + MIT1002_00028 0.12 -0.7
31,036 + MIT1002_00028 0.12 -1.0
31,064 - MIT1002_00028 0.18 -1.8
31,124 + MIT1002_00028 0.32 -1.6
31,124 + MIT1002_00028 0.32 +0.4
31,124 + MIT1002_00028 0.32 -0.3
31,132 - MIT1002_00028 0.34 -1.6
31,132 - MIT1002_00028 0.34 -1.0
31,132 - MIT1002_00028 0.34 +1.3
31,132 - MIT1002_00028 0.34 +0.4
31,132 - MIT1002_00028 0.34 -1.8
31,132 - MIT1002_00028 0.34 -0.4
31,132 - MIT1002_00028 0.34 +0.2
31,132 - MIT1002_00028 0.34 +0.7
31,194 + MIT1002_00028 0.48 +0.4
31,254 - MIT1002_00028 0.62 +0.9
31,263 + MIT1002_00028 0.64 +1.8
31,263 + MIT1002_00028 0.64 -1.1
31,263 + MIT1002_00028 0.64 +1.9
31,263 + MIT1002_00028 0.64 -1.6
31,275 + MIT1002_00028 0.67 +0.6
31,336 + MIT1002_00028 0.81 -1.1
31,345 + MIT1002_00028 0.83 -0.2
32,340 + MIT1002_00030 0.16 +1.1
32,403 + MIT1002_00030 0.28 -1.6

Or see this region's nucleotide sequence