Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03987

Experiment: monoculture; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03985 and MIT1002_03986 overlap by 4 nucleotidesMIT1002_03986 and MIT1002_03987 are separated by 99 nucleotidesMIT1002_03987 and MIT1002_03988 are separated by 58 nucleotides MIT1002_03985: MIT1002_03985 - General secretion pathway protein M, at 4,472,006 to 4,472,485 _03985 MIT1002_03986: MIT1002_03986 - Pectic enzymes secretion protein OutN, at 4,472,482 to 4,473,237 _03986 MIT1002_03987: MIT1002_03987 - hypothetical protein, at 4,473,337 to 4,474,770 _03987 MIT1002_03988: MIT1002_03988 - ribonuclease Z, at 4,474,829 to 4,475,884 _03988 Position (kb) 4473 4474 4475Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4472.377 kb on + strand, within MIT1002_03985at 4472.385 kb on - strand, within MIT1002_03985at 4472.468 kb on + strandat 4472.476 kb on - strandat 4472.509 kb on - strandat 4472.540 kb on - strandat 4472.635 kb on + strand, within MIT1002_03986at 4472.642 kb on + strand, within MIT1002_03986at 4472.661 kb on + strand, within MIT1002_03986at 4472.727 kb on + strand, within MIT1002_03986at 4472.727 kb on + strand, within MIT1002_03986at 4472.727 kb on + strand, within MIT1002_03986at 4472.752 kb on + strand, within MIT1002_03986at 4472.775 kb on + strand, within MIT1002_03986at 4472.798 kb on + strand, within MIT1002_03986at 4472.832 kb on + strand, within MIT1002_03986at 4472.832 kb on + strand, within MIT1002_03986at 4472.877 kb on + strand, within MIT1002_03986at 4472.933 kb on - strand, within MIT1002_03986at 4472.954 kb on + strand, within MIT1002_03986at 4473.027 kb on + strand, within MIT1002_03986at 4473.068 kb on + strand, within MIT1002_03986at 4473.069 kb on + strand, within MIT1002_03986at 4473.102 kb on + strand, within MIT1002_03986at 4473.161 kb on - strand, within MIT1002_03986at 4473.187 kb on + strandat 4473.215 kb on + strandat 4473.364 kb on + strandat 4473.387 kb on - strandat 4473.415 kb on - strandat 4473.460 kb on + strandat 4473.652 kb on + strand, within MIT1002_03987at 4473.658 kb on + strand, within MIT1002_03987at 4473.658 kb on + strand, within MIT1002_03987at 4473.666 kb on - strand, within MIT1002_03987at 4473.666 kb on - strand, within MIT1002_03987at 4473.666 kb on - strand, within MIT1002_03987at 4473.666 kb on - strand, within MIT1002_03987at 4473.775 kb on + strand, within MIT1002_03987at 4473.793 kb on - strand, within MIT1002_03987at 4473.800 kb on - strand, within MIT1002_03987at 4473.848 kb on - strand, within MIT1002_03987at 4473.925 kb on - strand, within MIT1002_03987at 4473.972 kb on - strand, within MIT1002_03987at 4473.996 kb on + strand, within MIT1002_03987at 4473.996 kb on + strand, within MIT1002_03987at 4473.996 kb on + strand, within MIT1002_03987at 4473.996 kb on + strand, within MIT1002_03987at 4473.996 kb on + strand, within MIT1002_03987at 4474.004 kb on - strand, within MIT1002_03987at 4474.004 kb on - strand, within MIT1002_03987at 4474.024 kb on + strand, within MIT1002_03987at 4474.126 kb on + strand, within MIT1002_03987at 4474.126 kb on + strand, within MIT1002_03987at 4474.128 kb on + strand, within MIT1002_03987at 4474.164 kb on + strand, within MIT1002_03987at 4474.171 kb on + strand, within MIT1002_03987at 4474.179 kb on - strand, within MIT1002_03987at 4474.181 kb on - strand, within MIT1002_03987at 4474.250 kb on - strand, within MIT1002_03987at 4474.342 kb on - strand, within MIT1002_03987at 4474.344 kb on + strand, within MIT1002_03987at 4474.344 kb on + strand, within MIT1002_03987at 4474.344 kb on + strand, within MIT1002_03987at 4474.344 kb on + strand, within MIT1002_03987at 4474.344 kb on + strand, within MIT1002_03987at 4474.344 kb on + strand, within MIT1002_03987at 4474.352 kb on - strand, within MIT1002_03987at 4474.352 kb on - strand, within MIT1002_03987at 4474.352 kb on - strand, within MIT1002_03987at 4474.352 kb on - strand, within MIT1002_03987at 4474.352 kb on - strand, within MIT1002_03987at 4474.352 kb on - strand, within MIT1002_03987at 4474.352 kb on - strand, within MIT1002_03987at 4474.352 kb on - strand, within MIT1002_03987at 4474.352 kb on - strand, within MIT1002_03987at 4474.352 kb on - strand, within MIT1002_03987at 4474.458 kb on + strand, within MIT1002_03987at 4474.479 kb on + strand, within MIT1002_03987at 4474.541 kb on - strand, within MIT1002_03987at 4474.541 kb on - strand, within MIT1002_03987at 4474.541 kb on - strand, within MIT1002_03987at 4474.590 kb on - strand, within MIT1002_03987at 4474.595 kb on + strand, within MIT1002_03987at 4474.605 kb on + strand, within MIT1002_03987at 4474.611 kb on + strand, within MIT1002_03987at 4474.624 kb on - strand, within MIT1002_03987at 4474.629 kb on - strandat 4474.639 kb on - strandat 4474.649 kb on - strandat 4474.714 kb on - strandat 4474.762 kb on - strandat 4474.765 kb on + strandat 4474.765 kb on + strandat 4474.793 kb on - strandat 4474.800 kb on - strandat 4474.800 kb on - strandat 4474.836 kb on + strandat 4474.846 kb on + strandat 4474.846 kb on - strandat 4474.909 kb on + strandat 4474.971 kb on + strand, within MIT1002_03988at 4474.971 kb on + strand, within MIT1002_03988at 4474.971 kb on + strand, within MIT1002_03988at 4475.029 kb on - strand, within MIT1002_03988at 4475.030 kb on + strand, within MIT1002_03988at 4475.030 kb on + strand, within MIT1002_03988at 4475.055 kb on - strand, within MIT1002_03988at 4475.060 kb on + strand, within MIT1002_03988at 4475.110 kb on - strand, within MIT1002_03988at 4475.148 kb on + strand, within MIT1002_03988at 4475.161 kb on - strand, within MIT1002_03988at 4475.162 kb on - strand, within MIT1002_03988at 4475.174 kb on + strand, within MIT1002_03988at 4475.187 kb on - strand, within MIT1002_03988at 4475.219 kb on - strand, within MIT1002_03988at 4475.230 kb on - strand, within MIT1002_03988at 4475.302 kb on + strand, within MIT1002_03988at 4475.302 kb on + strand, within MIT1002_03988at 4475.310 kb on - strand, within MIT1002_03988at 4475.361 kb on + strand, within MIT1002_03988at 4475.361 kb on + strand, within MIT1002_03988at 4475.380 kb on + strand, within MIT1002_03988at 4475.388 kb on - strand, within MIT1002_03988at 4475.388 kb on - strand, within MIT1002_03988at 4475.388 kb on - strand, within MIT1002_03988at 4475.388 kb on - strand, within MIT1002_03988at 4475.388 kb on - strand, within MIT1002_03988at 4475.611 kb on + strand, within MIT1002_03988at 4475.678 kb on - strand, within MIT1002_03988at 4475.681 kb on + strand, within MIT1002_03988at 4475.701 kb on + strand, within MIT1002_03988at 4475.709 kb on - strand, within MIT1002_03988at 4475.764 kb on + strand, within MIT1002_03988

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
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4,472,377 + MIT1002_03985 0.77 -1.7
4,472,385 - MIT1002_03985 0.79 +1.1
4,472,468 + -0.8
4,472,476 - +1.6
4,472,509 - -1.4
4,472,540 - -0.4
4,472,635 + MIT1002_03986 0.20 +0.1
4,472,642 + MIT1002_03986 0.21 +0.1
4,472,661 + MIT1002_03986 0.24 -2.8
4,472,727 + MIT1002_03986 0.32 -0.9
4,472,727 + MIT1002_03986 0.32 -1.5
4,472,727 + MIT1002_03986 0.32 +1.9
4,472,752 + MIT1002_03986 0.36 -0.6
4,472,775 + MIT1002_03986 0.39 +1.9
4,472,798 + MIT1002_03986 0.42 -1.2
4,472,832 + MIT1002_03986 0.46 +0.2
4,472,832 + MIT1002_03986 0.46 -0.3
4,472,877 + MIT1002_03986 0.52 -0.5
4,472,933 - MIT1002_03986 0.60 -0.6
4,472,954 + MIT1002_03986 0.62 +0.7
4,473,027 + MIT1002_03986 0.72 -0.2
4,473,068 + MIT1002_03986 0.78 +0.9
4,473,069 + MIT1002_03986 0.78 +1.3
4,473,102 + MIT1002_03986 0.82 -2.5
4,473,161 - MIT1002_03986 0.90 -0.9
4,473,187 + -1.2
4,473,215 + -0.3
4,473,364 + +1.4
4,473,387 - +0.3
4,473,415 - +1.9
4,473,460 + +0.8
4,473,652 + MIT1002_03987 0.22 -0.2
4,473,658 + MIT1002_03987 0.22 +0.1
4,473,658 + MIT1002_03987 0.22 -1.4
4,473,666 - MIT1002_03987 0.23 +0.1
4,473,666 - MIT1002_03987 0.23 +1.2
4,473,666 - MIT1002_03987 0.23 +1.5
4,473,666 - MIT1002_03987 0.23 +0.9
4,473,775 + MIT1002_03987 0.31 -0.1
4,473,793 - MIT1002_03987 0.32 +1.3
4,473,800 - MIT1002_03987 0.32 -1.3
4,473,848 - MIT1002_03987 0.36 +0.5
4,473,925 - MIT1002_03987 0.41 -1.6
4,473,972 - MIT1002_03987 0.44 +1.1
4,473,996 + MIT1002_03987 0.46 +0.1
4,473,996 + MIT1002_03987 0.46 +0.7
4,473,996 + MIT1002_03987 0.46 +0.0
4,473,996 + MIT1002_03987 0.46 +0.8
4,473,996 + MIT1002_03987 0.46 +0.3
4,474,004 - MIT1002_03987 0.47 -0.1
4,474,004 - MIT1002_03987 0.47 +1.1
4,474,024 + MIT1002_03987 0.48 -0.4
4,474,126 + MIT1002_03987 0.55 -2.0
4,474,126 + MIT1002_03987 0.55 +1.4
4,474,128 + MIT1002_03987 0.55 +1.4
4,474,164 + MIT1002_03987 0.58 -0.5
4,474,171 + MIT1002_03987 0.58 +1.1
4,474,179 - MIT1002_03987 0.59 -0.5
4,474,181 - MIT1002_03987 0.59 -1.1
4,474,250 - MIT1002_03987 0.64 +1.0
4,474,342 - MIT1002_03987 0.70 -0.5
4,474,344 + MIT1002_03987 0.70 -0.7
4,474,344 + MIT1002_03987 0.70 -0.5
4,474,344 + MIT1002_03987 0.70 +0.4
4,474,344 + MIT1002_03987 0.70 +2.3
4,474,344 + MIT1002_03987 0.70 +0.8
4,474,344 + MIT1002_03987 0.70 -0.6
4,474,352 - MIT1002_03987 0.71 +1.5
4,474,352 - MIT1002_03987 0.71 +3.4
4,474,352 - MIT1002_03987 0.71 -1.0
4,474,352 - MIT1002_03987 0.71 -1.2
4,474,352 - MIT1002_03987 0.71 +0.7
4,474,352 - MIT1002_03987 0.71 +1.9
4,474,352 - MIT1002_03987 0.71 +0.3
4,474,352 - MIT1002_03987 0.71 +0.3
4,474,352 - MIT1002_03987 0.71 -1.2
4,474,352 - MIT1002_03987 0.71 +0.3
4,474,458 + MIT1002_03987 0.78 -1.7
4,474,479 + MIT1002_03987 0.80 +0.1
4,474,541 - MIT1002_03987 0.84 +0.5
4,474,541 - MIT1002_03987 0.84 -0.5
4,474,541 - MIT1002_03987 0.84 -1.2
4,474,590 - MIT1002_03987 0.87 -0.1
4,474,595 + MIT1002_03987 0.88 +0.8
4,474,605 + MIT1002_03987 0.88 -0.5
4,474,611 + MIT1002_03987 0.89 +1.5
4,474,624 - MIT1002_03987 0.90 +0.6
4,474,629 - +0.5
4,474,639 - -1.0
4,474,649 - +0.6
4,474,714 - +1.4
4,474,762 - +1.3
4,474,765 + +0.7
4,474,765 + -1.8
4,474,793 - +0.3
4,474,800 - -1.3
4,474,800 - -0.8
4,474,836 + +0.8
4,474,846 + -0.2
4,474,846 - +1.3
4,474,909 + +0.5
4,474,971 + MIT1002_03988 0.13 +0.3
4,474,971 + MIT1002_03988 0.13 +0.0
4,474,971 + MIT1002_03988 0.13 -1.1
4,475,029 - MIT1002_03988 0.19 +0.6
4,475,030 + MIT1002_03988 0.19 +1.1
4,475,030 + MIT1002_03988 0.19 +0.1
4,475,055 - MIT1002_03988 0.21 +0.7
4,475,060 + MIT1002_03988 0.22 -0.5
4,475,110 - MIT1002_03988 0.27 +0.5
4,475,148 + MIT1002_03988 0.30 +0.1
4,475,161 - MIT1002_03988 0.31 +0.1
4,475,162 - MIT1002_03988 0.32 -2.3
4,475,174 + MIT1002_03988 0.33 -1.0
4,475,187 - MIT1002_03988 0.34 -2.4
4,475,219 - MIT1002_03988 0.37 -0.1
4,475,230 - MIT1002_03988 0.38 -0.7
4,475,302 + MIT1002_03988 0.45 -0.8
4,475,302 + MIT1002_03988 0.45 -0.2
4,475,310 - MIT1002_03988 0.46 +0.5
4,475,361 + MIT1002_03988 0.50 -0.0
4,475,361 + MIT1002_03988 0.50 +0.5
4,475,380 + MIT1002_03988 0.52 +0.2
4,475,388 - MIT1002_03988 0.53 -1.5
4,475,388 - MIT1002_03988 0.53 -1.1
4,475,388 - MIT1002_03988 0.53 -2.7
4,475,388 - MIT1002_03988 0.53 -0.3
4,475,388 - MIT1002_03988 0.53 +0.3
4,475,611 + MIT1002_03988 0.74 +1.3
4,475,678 - MIT1002_03988 0.80 -1.7
4,475,681 + MIT1002_03988 0.81 -0.0
4,475,701 + MIT1002_03988 0.83 -1.1
4,475,709 - MIT1002_03988 0.83 +1.8
4,475,764 + MIT1002_03988 0.89 -0.2

Or see this region's nucleotide sequence