Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03916

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
4,389,376	-				-0.8
4,389,389	+				-2.0
4,389,397	-				+1.3
4,389,443	-				+0.5
4,389,504	-		MIT1002_03915	0.14	+1.1
4,389,597	-		MIT1002_03915	0.24	-1.3
4,389,619	-		MIT1002_03915	0.27	+0.9
4,389,669	+		MIT1002_03915	0.32	+0.0
4,389,714	-		MIT1002_03915	0.37	-0.1
4,389,792	+		MIT1002_03915	0.46	-1.9
4,389,800	-		MIT1002_03915	0.47	-0.2
4,389,870	-		MIT1002_03915	0.55	+0.7
4,389,870	-		MIT1002_03915	0.55	-0.7
4,389,893	+		MIT1002_03915	0.57	-1.2
4,389,901	-		MIT1002_03915	0.58	+0.9
4,389,983	-		MIT1002_03915	0.67	+0.2
4,390,031	-		MIT1002_03915	0.73	-0.9
4,390,031	-		MIT1002_03915	0.73	+1.1
4,390,153	-		MIT1002_03915	0.86	-0.8
4,390,154	+		MIT1002_03915	0.86	+0.1
4,390,182	+		MIT1002_03915	0.89	+0.7
4,390,211	+				-0.4
4,390,237	-				-0.0
4,390,253	+				+1.1
4,390,253	+				-0.5
4,390,303	+				+0.8
4,390,336	+				+1.5
4,390,357	+				+0.0
4,390,380	+				-1.4
4,390,380	+				+0.3
4,390,388	-		MIT1002_03916	0.11	-1.6
4,390,416	+		MIT1002_03916	0.14	-0.5
4,390,426	+		MIT1002_03916	0.15	-0.8
4,390,523	+		MIT1002_03916	0.28	-3.0
4,390,529	+		MIT1002_03916	0.28	-0.1
4,390,529	+		MIT1002_03916	0.28	-0.3
4,390,537	-		MIT1002_03916	0.29	-0.1
4,390,574	+		MIT1002_03916	0.34	+0.2
4,390,574	+		MIT1002_03916	0.34	-0.2
4,390,576	+		MIT1002_03916	0.34	-0.7
4,390,582	-		MIT1002_03916	0.35	+0.7
4,390,672	-		MIT1002_03916	0.46	+0.2
4,390,679	+		MIT1002_03916	0.47	+0.3
4,390,720	-		MIT1002_03916	0.52	-0.8
4,390,739	+		MIT1002_03916	0.55	-0.5
4,390,747	-		MIT1002_03916	0.56	-0.4
4,390,747	-		MIT1002_03916	0.56	-2.6
4,390,823	+		MIT1002_03916	0.65	+0.9
4,390,842	+		MIT1002_03916	0.68	-0.0
4,390,842	+		MIT1002_03916	0.68	+0.2
4,390,905	-		MIT1002_03916	0.76	-0.8
4,391,020	+				-0.8
4,391,029	+				-1.3
4,391,029	+				+0.6
4,391,029	+				-0.4
4,391,029	+				+1.0
4,391,029	+				+1.9
4,391,029	+				+2.2
4,391,037	-				-0.6
4,391,037	-				+0.8
4,391,037	-				-0.9
4,391,037	-				+0.0
4,391,037	-				+0.1
4,391,037	-				+0.1
4,391,037	-				-0.9
4,391,037	-				-0.2
4,391,037	-				-1.1
4,391,080	-				-0.1
4,391,080	-				+0.7
4,391,360	+				+0.2
4,391,378	-				+0.1
4,391,415	+				-1.8
4,391,423	-				+1.3
4,391,453	-				-0.5
4,391,455	+				+1.9
4,391,514	+				+1.1
4,391,514	+				+0.6
4,391,714	-		MIT1002_03917	0.17	+1.0
4,391,714	-		MIT1002_03917	0.17	+1.2
4,391,731	+		MIT1002_03917	0.18	-0.4
4,391,741	+		MIT1002_03917	0.18	-0.4
4,391,762	+		MIT1002_03917	0.19	+0.7
4,391,829	-		MIT1002_03917	0.22	+2.0
4,391,884	-		MIT1002_03917	0.24	-0.1
4,391,901	-		MIT1002_03917	0.25	+0.7
4,391,954	+		MIT1002_03917	0.27	+1.1
4,391,962	+		MIT1002_03917	0.27	+1.8
4,391,969	+		MIT1002_03917	0.28	+1.2
4,392,013	-		MIT1002_03917	0.30	+2.9
4,392,072	+		MIT1002_03917	0.32	+0.1