Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03856

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
4,318,975	+		MIT1002_03854	0.52	-0.2
4,319,043	+		MIT1002_03854	0.61	-0.9
4,319,051	-		MIT1002_03854	0.62	-0.1
4,319,097	+		MIT1002_03854	0.68	-0.4
4,319,157	+		MIT1002_03854	0.75	+1.6
4,319,157	+		MIT1002_03854	0.75	+2.0
4,319,157	+		MIT1002_03854	0.75	-0.3
4,319,157	+		MIT1002_03854	0.75	-1.3
4,319,157	+		MIT1002_03854	0.75	+1.2
4,319,157	+		MIT1002_03854	0.75	-1.4
4,319,157	+		MIT1002_03854	0.75	-0.9
4,319,157	+		MIT1002_03854	0.75	-1.5
4,319,165	-		MIT1002_03854	0.76	-1.2
4,319,165	-		MIT1002_03854	0.76	-1.4
4,319,165	-		MIT1002_03854	0.76	-1.0
4,319,165	-		MIT1002_03854	0.76	+2.6
4,319,165	-		MIT1002_03854	0.76	+0.2
4,319,165	-		MIT1002_03854	0.76	+1.4
4,319,188	+		MIT1002_03854	0.79	-1.3
4,319,193	+		MIT1002_03854	0.80	-0.2
4,319,193	+		MIT1002_03854	0.80	+0.5
4,319,234	+		MIT1002_03854	0.85	+0.7
4,319,252	+		MIT1002_03854	0.87	+0.6
4,319,294	-				+0.4
4,319,330	-				-0.5
4,319,350	+				+0.4
4,319,501	+		MIT1002_03855	0.19	-1.3
4,319,605	-		MIT1002_03855	0.78	-2.4
4,319,638	+				-0.5
4,319,638	+				+1.1
4,319,638	+				-1.9
4,319,643	+				-0.4
4,319,646	-				-0.6
4,319,648	+				+0.2
4,319,651	-				+1.1
4,319,656	-				-0.3
4,319,657	-				-0.3
4,319,657	-				-0.8
4,319,662	+				+0.4
4,319,679	+				+0.7
4,319,747	+				+0.8
4,319,747	+				-0.9
4,319,755	-				+1.5
4,319,767	+				-0.7
4,319,869	-				-0.9
4,319,869	-				-0.3
4,319,969	+				+0.1
4,319,969	+				-1.3
4,319,969	+				+0.8
4,319,977	-				-0.3
4,320,023	-		MIT1002_03856	0.12	-0.7
4,320,063	+		MIT1002_03856	0.22	-0.7
4,320,063	+		MIT1002_03856	0.22	+1.7
4,320,082	+		MIT1002_03856	0.26	-0.1
4,320,096	-		MIT1002_03856	0.29	-0.3
4,320,106	-		MIT1002_03856	0.32	-0.8
4,320,133	+		MIT1002_03856	0.38	+1.2
4,320,143	+		MIT1002_03856	0.40	+1.2
4,320,144	+		MIT1002_03856	0.41	-0.5
4,320,149	-		MIT1002_03856	0.42	+0.4
4,320,250	+		MIT1002_03856	0.66	-0.6
4,320,250	+		MIT1002_03856	0.66	+0.1
4,320,250	+		MIT1002_03856	0.66	+2.2
4,320,255	+		MIT1002_03856	0.67	+0.0
4,320,258	-		MIT1002_03856	0.68	-1.7
4,320,258	-		MIT1002_03856	0.68	+0.9
4,320,258	-		MIT1002_03856	0.68	+0.6
4,320,270	-		MIT1002_03856	0.70	+1.8
4,320,281	+		MIT1002_03856	0.73	-2.0
4,320,281	+		MIT1002_03856	0.73	-0.5
4,320,281	+		MIT1002_03856	0.73	-0.3
4,320,281	+		MIT1002_03856	0.73	-0.7
4,320,289	-		MIT1002_03856	0.75	+0.0
4,320,289	-		MIT1002_03856	0.75	-0.6
4,320,289	-		MIT1002_03856	0.75	+1.0
4,320,335	+		MIT1002_03856	0.86	-1.5
4,320,407	+				-0.5
4,320,483	-				+0.0
4,320,776	-		MIT1002_03857	0.17	-0.6
4,320,776	-		MIT1002_03857	0.17	+0.2
4,320,874	+		MIT1002_03857	0.24	-0.1
4,320,884	+		MIT1002_03857	0.25	+0.9
4,320,884	+		MIT1002_03857	0.25	+0.1
4,320,886	+		MIT1002_03857	0.25	+1.1
4,320,894	-		MIT1002_03857	0.25	+0.9
4,320,894	-		MIT1002_03857	0.25	+2.5
4,320,896	+		MIT1002_03857	0.25	+2.0
4,320,961	+		MIT1002_03857	0.30	+0.7
4,321,009	+		MIT1002_03857	0.33	-0.4
4,321,011	-		MIT1002_03857	0.34	-1.1
4,321,028	-		MIT1002_03857	0.35	-0.1
4,321,068	-		MIT1002_03857	0.38	-0.9
4,321,095	-		MIT1002_03857	0.40	+0.1
4,321,095	-		MIT1002_03857	0.40	-1.4
4,321,176	+		MIT1002_03857	0.45	-0.6
4,321,179	-		MIT1002_03857	0.46	+0.2
4,321,198	-		MIT1002_03857	0.47	+0.2
4,321,271	+		MIT1002_03857	0.52	+0.4
4,321,271	+		MIT1002_03857	0.52	+1.7
4,321,271	+		MIT1002_03857	0.52	+0.7
4,321,296	+		MIT1002_03857	0.54	+0.1
4,321,301	+		MIT1002_03857	0.54	+0.7
4,321,301	+		MIT1002_03857	0.54	+0.7
4,321,304	-		MIT1002_03857	0.55	+2.0