Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03853

Experiment: monoculture; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03851 and MIT1002_03852 are separated by 109 nucleotidesMIT1002_03852 and MIT1002_03853 are separated by 71 nucleotidesMIT1002_03853 and MIT1002_03854 are separated by 155 nucleotides MIT1002_03851: MIT1002_03851 - Transcriptional regulatory protein ZraR, at 4,314,440 to 4,315,744 _03851 MIT1002_03852: MIT1002_03852 - hypothetical protein, at 4,315,854 to 4,316,222 _03852 MIT1002_03853: MIT1002_03853 - TonB-dependent copper receptor, at 4,316,294 to 4,318,411 _03853 MIT1002_03854: MIT1002_03854 - Sulfite exporter TauE/SafE, at 4,318,567 to 4,319,349 _03854 Position (kb) 4316 4317 4318 4319Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4315.297 kb on + strand, within MIT1002_03851at 4315.297 kb on + strand, within MIT1002_03851at 4315.386 kb on - strand, within MIT1002_03851at 4315.397 kb on - strand, within MIT1002_03851at 4315.469 kb on + strand, within MIT1002_03851at 4315.469 kb on + strand, within MIT1002_03851at 4315.469 kb on + strand, within MIT1002_03851at 4315.469 kb on + strand, within MIT1002_03851at 4315.469 kb on + strand, within MIT1002_03851at 4315.477 kb on - strand, within MIT1002_03851at 4315.477 kb on - strand, within MIT1002_03851at 4315.479 kb on + strand, within MIT1002_03851at 4315.487 kb on - strand, within MIT1002_03851at 4315.487 kb on - strand, within MIT1002_03851at 4315.549 kb on + strand, within MIT1002_03851at 4315.549 kb on + strand, within MIT1002_03851at 4315.565 kb on + strand, within MIT1002_03851at 4315.596 kb on - strand, within MIT1002_03851at 4315.603 kb on - strand, within MIT1002_03851at 4315.678 kb on + strandat 4315.688 kb on - strandat 4315.695 kb on + strandat 4315.695 kb on + strandat 4315.695 kb on + strandat 4315.695 kb on + strandat 4315.695 kb on + strandat 4315.703 kb on - strandat 4315.703 kb on - strandat 4315.703 kb on - strandat 4315.703 kb on - strandat 4315.834 kb on + strandat 4315.836 kb on - strandat 4315.870 kb on + strandat 4315.950 kb on + strand, within MIT1002_03852at 4315.958 kb on - strand, within MIT1002_03852at 4315.958 kb on - strand, within MIT1002_03852at 4316.014 kb on + strand, within MIT1002_03852at 4316.022 kb on - strand, within MIT1002_03852at 4316.024 kb on + strand, within MIT1002_03852at 4316.024 kb on + strand, within MIT1002_03852at 4316.024 kb on + strand, within MIT1002_03852at 4316.049 kb on + strand, within MIT1002_03852at 4316.105 kb on - strand, within MIT1002_03852at 4316.167 kb on + strand, within MIT1002_03852at 4316.168 kb on - strand, within MIT1002_03852at 4316.173 kb on - strand, within MIT1002_03852at 4316.193 kb on + strandat 4316.218 kb on + strandat 4316.226 kb on - strandat 4316.227 kb on + strandat 4316.339 kb on + strandat 4316.347 kb on - strandat 4316.347 kb on - strandat 4316.421 kb on + strandat 4316.451 kb on - strandat 4316.557 kb on - strand, within MIT1002_03853at 4316.562 kb on - strand, within MIT1002_03853at 4316.562 kb on - strand, within MIT1002_03853at 4316.571 kb on - strand, within MIT1002_03853at 4316.571 kb on - strand, within MIT1002_03853at 4316.626 kb on - strand, within MIT1002_03853at 4316.656 kb on + strand, within MIT1002_03853at 4316.656 kb on + strand, within MIT1002_03853at 4316.661 kb on + strand, within MIT1002_03853at 4316.661 kb on + strand, within MIT1002_03853at 4316.671 kb on + strand, within MIT1002_03853at 4316.686 kb on - strand, within MIT1002_03853at 4316.706 kb on + strand, within MIT1002_03853at 4316.706 kb on + strand, within MIT1002_03853at 4316.714 kb on + strand, within MIT1002_03853at 4316.714 kb on - strand, within MIT1002_03853at 4316.714 kb on - strand, within MIT1002_03853at 4316.719 kb on - strand, within MIT1002_03853at 4316.722 kb on - strand, within MIT1002_03853at 4316.727 kb on + strand, within MIT1002_03853at 4316.734 kb on + strand, within MIT1002_03853at 4316.889 kb on + strand, within MIT1002_03853at 4316.894 kb on - strand, within MIT1002_03853at 4316.914 kb on - strand, within MIT1002_03853at 4316.936 kb on - strand, within MIT1002_03853at 4316.968 kb on + strand, within MIT1002_03853at 4316.968 kb on + strand, within MIT1002_03853at 4316.976 kb on - strand, within MIT1002_03853at 4316.978 kb on + strand, within MIT1002_03853at 4317.058 kb on - strand, within MIT1002_03853at 4317.087 kb on + strand, within MIT1002_03853at 4317.087 kb on + strand, within MIT1002_03853at 4317.228 kb on - strand, within MIT1002_03853at 4317.246 kb on + strand, within MIT1002_03853at 4317.269 kb on - strand, within MIT1002_03853at 4317.313 kb on - strand, within MIT1002_03853at 4317.340 kb on + strand, within MIT1002_03853at 4317.355 kb on + strand, within MIT1002_03853at 4317.482 kb on + strand, within MIT1002_03853at 4317.511 kb on - strand, within MIT1002_03853at 4317.631 kb on + strand, within MIT1002_03853at 4317.632 kb on - strand, within MIT1002_03853at 4317.652 kb on - strand, within MIT1002_03853at 4317.665 kb on + strand, within MIT1002_03853at 4317.751 kb on - strand, within MIT1002_03853at 4317.768 kb on + strand, within MIT1002_03853at 4317.776 kb on - strand, within MIT1002_03853at 4317.778 kb on + strand, within MIT1002_03853at 4317.925 kb on + strand, within MIT1002_03853at 4317.943 kb on + strand, within MIT1002_03853at 4317.977 kb on + strand, within MIT1002_03853at 4317.987 kb on + strand, within MIT1002_03853at 4318.013 kb on + strand, within MIT1002_03853at 4318.013 kb on + strand, within MIT1002_03853at 4318.021 kb on - strand, within MIT1002_03853at 4318.021 kb on - strand, within MIT1002_03853at 4318.062 kb on + strand, within MIT1002_03853at 4318.070 kb on + strand, within MIT1002_03853at 4318.092 kb on + strand, within MIT1002_03853at 4318.103 kb on - strand, within MIT1002_03853at 4318.223 kb on - strandat 4318.230 kb on + strandat 4318.249 kb on + strandat 4318.249 kb on + strandat 4318.257 kb on - strandat 4318.294 kb on + strandat 4318.302 kb on - strandat 4318.309 kb on - strandat 4318.309 kb on - strandat 4318.309 kb on - strandat 4318.313 kb on + strandat 4318.316 kb on + strandat 4318.404 kb on + strandat 4318.446 kb on - strandat 4318.477 kb on - strandat 4318.487 kb on + strandat 4318.487 kb on + strandat 4318.529 kb on + strandat 4318.531 kb on + strandat 4318.562 kb on - strandat 4318.645 kb on - strandat 4318.675 kb on + strand, within MIT1002_03854at 4318.683 kb on - strand, within MIT1002_03854at 4318.785 kb on + strand, within MIT1002_03854at 4318.793 kb on - strand, within MIT1002_03854at 4318.803 kb on + strand, within MIT1002_03854at 4318.803 kb on - strand, within MIT1002_03854at 4318.805 kb on + strand, within MIT1002_03854at 4318.811 kb on - strand, within MIT1002_03854at 4318.813 kb on - strand, within MIT1002_03854at 4318.882 kb on - strand, within MIT1002_03854at 4318.926 kb on - strand, within MIT1002_03854at 4318.961 kb on + strand, within MIT1002_03854at 4318.969 kb on - strand, within MIT1002_03854at 4318.975 kb on + strand, within MIT1002_03854at 4319.043 kb on + strand, within MIT1002_03854at 4319.051 kb on - strand, within MIT1002_03854at 4319.097 kb on + strand, within MIT1002_03854at 4319.157 kb on + strand, within MIT1002_03854at 4319.157 kb on + strand, within MIT1002_03854at 4319.157 kb on + strand, within MIT1002_03854at 4319.157 kb on + strand, within MIT1002_03854at 4319.157 kb on + strand, within MIT1002_03854at 4319.157 kb on + strand, within MIT1002_03854at 4319.157 kb on + strand, within MIT1002_03854at 4319.157 kb on + strand, within MIT1002_03854at 4319.165 kb on - strand, within MIT1002_03854at 4319.165 kb on - strand, within MIT1002_03854at 4319.165 kb on - strand, within MIT1002_03854at 4319.165 kb on - strand, within MIT1002_03854at 4319.165 kb on - strand, within MIT1002_03854at 4319.165 kb on - strand, within MIT1002_03854at 4319.188 kb on + strand, within MIT1002_03854at 4319.193 kb on + strand, within MIT1002_03854at 4319.193 kb on + strand, within MIT1002_03854at 4319.234 kb on + strand, within MIT1002_03854at 4319.252 kb on + strand, within MIT1002_03854at 4319.294 kb on - strandat 4319.330 kb on - strandat 4319.350 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
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4,315,297 + MIT1002_03851 0.66 -1.0
4,315,297 + MIT1002_03851 0.66 -0.9
4,315,386 - MIT1002_03851 0.72 -1.2
4,315,397 - MIT1002_03851 0.73 -2.3
4,315,469 + MIT1002_03851 0.79 +0.7
4,315,469 + MIT1002_03851 0.79 -0.5
4,315,469 + MIT1002_03851 0.79 -0.1
4,315,469 + MIT1002_03851 0.79 +0.3
4,315,469 + MIT1002_03851 0.79 -1.1
4,315,477 - MIT1002_03851 0.79 -0.3
4,315,477 - MIT1002_03851 0.79 -0.0
4,315,479 + MIT1002_03851 0.80 +2.4
4,315,487 - MIT1002_03851 0.80 -0.3
4,315,487 - MIT1002_03851 0.80 +0.5
4,315,549 + MIT1002_03851 0.85 -0.6
4,315,549 + MIT1002_03851 0.85 +1.0
4,315,565 + MIT1002_03851 0.86 -2.1
4,315,596 - MIT1002_03851 0.89 -0.6
4,315,603 - MIT1002_03851 0.89 +0.4
4,315,678 + -0.8
4,315,688 - +0.8
4,315,695 + -0.9
4,315,695 + +0.9
4,315,695 + +0.7
4,315,695 + -0.9
4,315,695 + -0.7
4,315,703 - -0.1
4,315,703 - -1.7
4,315,703 - +0.1
4,315,703 - +1.2
4,315,834 + -2.0
4,315,836 - -0.9
4,315,870 + -1.2
4,315,950 + MIT1002_03852 0.26 +0.4
4,315,958 - MIT1002_03852 0.28 +0.2
4,315,958 - MIT1002_03852 0.28 -1.6
4,316,014 + MIT1002_03852 0.43 -0.4
4,316,022 - MIT1002_03852 0.46 -1.8
4,316,024 + MIT1002_03852 0.46 -1.6
4,316,024 + MIT1002_03852 0.46 -2.8
4,316,024 + MIT1002_03852 0.46 -2.3
4,316,049 + MIT1002_03852 0.53 -0.6
4,316,105 - MIT1002_03852 0.68 -3.2
4,316,167 + MIT1002_03852 0.85 -2.0
4,316,168 - MIT1002_03852 0.85 +0.7
4,316,173 - MIT1002_03852 0.86 -0.1
4,316,193 + -2.0
4,316,218 + +0.4
4,316,226 - -1.3
4,316,227 + -0.6
4,316,339 + -0.9
4,316,347 - -2.1
4,316,347 - -2.2
4,316,421 + -1.8
4,316,451 - -0.7
4,316,557 - MIT1002_03853 0.12 -1.4
4,316,562 - MIT1002_03853 0.13 -1.6
4,316,562 - MIT1002_03853 0.13 -0.9
4,316,571 - MIT1002_03853 0.13 -2.1
4,316,571 - MIT1002_03853 0.13 -0.6
4,316,626 - MIT1002_03853 0.16 +0.0
4,316,656 + MIT1002_03853 0.17 -1.5
4,316,656 + MIT1002_03853 0.17 -0.5
4,316,661 + MIT1002_03853 0.17 -1.1
4,316,661 + MIT1002_03853 0.17 -3.2
4,316,671 + MIT1002_03853 0.18 -1.2
4,316,686 - MIT1002_03853 0.19 -1.3
4,316,706 + MIT1002_03853 0.19 -0.7
4,316,706 + MIT1002_03853 0.19 +0.2
4,316,714 + MIT1002_03853 0.20 -0.4
4,316,714 - MIT1002_03853 0.20 -0.9
4,316,714 - MIT1002_03853 0.20 -0.4
4,316,719 - MIT1002_03853 0.20 -1.2
4,316,722 - MIT1002_03853 0.20 -2.9
4,316,727 + MIT1002_03853 0.20 -2.0
4,316,734 + MIT1002_03853 0.21 -0.7
4,316,889 + MIT1002_03853 0.28 -2.6
4,316,894 - MIT1002_03853 0.28 -1.6
4,316,914 - MIT1002_03853 0.29 -1.1
4,316,936 - MIT1002_03853 0.30 -1.8
4,316,968 + MIT1002_03853 0.32 -0.5
4,316,968 + MIT1002_03853 0.32 -1.4
4,316,976 - MIT1002_03853 0.32 -0.8
4,316,978 + MIT1002_03853 0.32 -1.7
4,317,058 - MIT1002_03853 0.36 -3.4
4,317,087 + MIT1002_03853 0.37 -3.2
4,317,087 + MIT1002_03853 0.37 -1.8
4,317,228 - MIT1002_03853 0.44 -1.1
4,317,246 + MIT1002_03853 0.45 -2.0
4,317,269 - MIT1002_03853 0.46 -2.9
4,317,313 - MIT1002_03853 0.48 +1.0
4,317,340 + MIT1002_03853 0.49 -2.3
4,317,355 + MIT1002_03853 0.50 -2.0
4,317,482 + MIT1002_03853 0.56 -0.9
4,317,511 - MIT1002_03853 0.57 -1.3
4,317,631 + MIT1002_03853 0.63 -1.5
4,317,632 - MIT1002_03853 0.63 -1.3
4,317,652 - MIT1002_03853 0.64 -0.3
4,317,665 + MIT1002_03853 0.65 -3.7
4,317,751 - MIT1002_03853 0.69 +0.7
4,317,768 + MIT1002_03853 0.70 -1.1
4,317,776 - MIT1002_03853 0.70 -2.6
4,317,778 + MIT1002_03853 0.70 +1.7
4,317,925 + MIT1002_03853 0.77 +1.7
4,317,943 + MIT1002_03853 0.78 -2.1
4,317,977 + MIT1002_03853 0.79 -2.6
4,317,987 + MIT1002_03853 0.80 -2.1
4,318,013 + MIT1002_03853 0.81 -2.2
4,318,013 + MIT1002_03853 0.81 -2.6
4,318,021 - MIT1002_03853 0.82 -2.5
4,318,021 - MIT1002_03853 0.82 -2.2
4,318,062 + MIT1002_03853 0.83 -1.4
4,318,070 + MIT1002_03853 0.84 -2.5
4,318,092 + MIT1002_03853 0.85 +0.4
4,318,103 - MIT1002_03853 0.85 -0.6
4,318,223 - -1.9
4,318,230 + -2.6
4,318,249 + +0.1
4,318,249 + +1.2
4,318,257 - -0.7
4,318,294 + -0.6
4,318,302 - -3.8
4,318,309 - -2.6
4,318,309 - -1.0
4,318,309 - -0.6
4,318,313 + -1.8
4,318,316 + -0.6
4,318,404 + -1.1
4,318,446 - -1.3
4,318,477 - +0.7
4,318,487 + +2.3
4,318,487 + +1.8
4,318,529 + -0.6
4,318,531 + +0.3
4,318,562 - +0.3
4,318,645 - +0.8
4,318,675 + MIT1002_03854 0.14 +0.7
4,318,683 - MIT1002_03854 0.15 +0.7
4,318,785 + MIT1002_03854 0.28 +0.1
4,318,793 - MIT1002_03854 0.29 +1.4
4,318,803 + MIT1002_03854 0.30 -1.5
4,318,803 - MIT1002_03854 0.30 +0.1
4,318,805 + MIT1002_03854 0.30 -1.2
4,318,811 - MIT1002_03854 0.31 -1.8
4,318,813 - MIT1002_03854 0.31 -0.1
4,318,882 - MIT1002_03854 0.40 -0.5
4,318,926 - MIT1002_03854 0.46 -0.1
4,318,961 + MIT1002_03854 0.50 -1.3
4,318,969 - MIT1002_03854 0.51 -2.8
4,318,975 + MIT1002_03854 0.52 -0.2
4,319,043 + MIT1002_03854 0.61 -0.9
4,319,051 - MIT1002_03854 0.62 -0.1
4,319,097 + MIT1002_03854 0.68 -0.4
4,319,157 + MIT1002_03854 0.75 +1.6
4,319,157 + MIT1002_03854 0.75 +2.0
4,319,157 + MIT1002_03854 0.75 -0.3
4,319,157 + MIT1002_03854 0.75 -1.3
4,319,157 + MIT1002_03854 0.75 +1.2
4,319,157 + MIT1002_03854 0.75 -1.4
4,319,157 + MIT1002_03854 0.75 -0.9
4,319,157 + MIT1002_03854 0.75 -1.5
4,319,165 - MIT1002_03854 0.76 -1.2
4,319,165 - MIT1002_03854 0.76 -1.4
4,319,165 - MIT1002_03854 0.76 -1.0
4,319,165 - MIT1002_03854 0.76 +2.6
4,319,165 - MIT1002_03854 0.76 +0.2
4,319,165 - MIT1002_03854 0.76 +1.4
4,319,188 + MIT1002_03854 0.79 -1.3
4,319,193 + MIT1002_03854 0.80 -0.2
4,319,193 + MIT1002_03854 0.80 +0.5
4,319,234 + MIT1002_03854 0.85 +0.7
4,319,252 + MIT1002_03854 0.87 +0.6
4,319,294 - +0.4
4,319,330 - -0.5
4,319,350 + +0.4

Or see this region's nucleotide sequence