Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03762 and MIT1002_03763 are separated by 40 nucleotides MIT1002_03763 and MIT1002_03764 are separated by 40 nucleotides MIT1002_03764 and MIT1002_03765 are separated by 223 nucleotides
MIT1002_03762: MIT1002_03762 - Transposase DDE domain protein, at 4,203,931 to 4,205,133
_03762
MIT1002_03763: MIT1002_03763 - metallophosphoesterase, DNA ligase-associated, at 4,205,174 to 4,205,878
_03763
MIT1002_03764: MIT1002_03764 - ATP-dependent helicase, at 4,205,919 to 4,208,552
_03764
MIT1002_03765: MIT1002_03765 - putative membrane protein, at 4,208,776 to 4,209,954
_03765
Position (kb) 4205
4206
4207
4208
4209 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4205.215 kb on + strand at 4205.236 kb on + strand at 4205.271 kb on + strand, within MIT1002_03763 at 4205.281 kb on + strand, within MIT1002_03763 at 4205.289 kb on - strand, within MIT1002_03763 at 4205.332 kb on - strand, within MIT1002_03763 at 4205.347 kb on + strand, within MIT1002_03763 at 4205.364 kb on + strand, within MIT1002_03763 at 4205.510 kb on - strand, within MIT1002_03763 at 4205.516 kb on - strand, within MIT1002_03763 at 4205.551 kb on - strand, within MIT1002_03763 at 4205.560 kb on + strand, within MIT1002_03763 at 4205.560 kb on + strand, within MIT1002_03763 at 4205.568 kb on - strand, within MIT1002_03763 at 4205.608 kb on - strand, within MIT1002_03763 at 4205.630 kb on + strand, within MIT1002_03763 at 4205.638 kb on - strand, within MIT1002_03763 at 4205.659 kb on - strand, within MIT1002_03763 at 4205.732 kb on + strand, within MIT1002_03763 at 4205.740 kb on - strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.754 kb on - strand, within MIT1002_03763 at 4205.754 kb on - strand, within MIT1002_03763 at 4206.027 kb on + strand at 4206.085 kb on + strand at 4206.171 kb on - strand at 4206.404 kb on + strand, within MIT1002_03764 at 4206.412 kb on - strand, within MIT1002_03764 at 4206.462 kb on + strand, within MIT1002_03764 at 4206.463 kb on - strand, within MIT1002_03764 at 4206.470 kb on - strand, within MIT1002_03764 at 4206.509 kb on + strand, within MIT1002_03764 at 4206.549 kb on + strand, within MIT1002_03764 at 4206.552 kb on - strand, within MIT1002_03764 at 4206.554 kb on + strand, within MIT1002_03764 at 4206.557 kb on - strand, within MIT1002_03764 at 4206.557 kb on - strand, within MIT1002_03764 at 4206.599 kb on + strand, within MIT1002_03764 at 4206.653 kb on - strand, within MIT1002_03764 at 4206.678 kb on + strand, within MIT1002_03764 at 4206.729 kb on - strand, within MIT1002_03764 at 4206.781 kb on + strand, within MIT1002_03764 at 4206.789 kb on - strand, within MIT1002_03764 at 4206.801 kb on + strand, within MIT1002_03764 at 4206.871 kb on + strand, within MIT1002_03764 at 4206.908 kb on + strand, within MIT1002_03764 at 4206.931 kb on + strand, within MIT1002_03764 at 4206.934 kb on - strand, within MIT1002_03764 at 4207.069 kb on + strand, within MIT1002_03764 at 4207.120 kb on + strand, within MIT1002_03764 at 4207.128 kb on - strand, within MIT1002_03764 at 4207.182 kb on + strand, within MIT1002_03764 at 4207.230 kb on - strand, within MIT1002_03764 at 4207.285 kb on - strand, within MIT1002_03764 at 4207.287 kb on + strand, within MIT1002_03764 at 4207.322 kb on + strand, within MIT1002_03764 at 4207.325 kb on - strand, within MIT1002_03764 at 4207.406 kb on + strand, within MIT1002_03764 at 4207.419 kb on - strand, within MIT1002_03764 at 4207.419 kb on - strand, within MIT1002_03764 at 4207.419 kb on - strand, within MIT1002_03764 at 4207.437 kb on + strand, within MIT1002_03764 at 4207.438 kb on - strand, within MIT1002_03764 at 4207.443 kb on + strand, within MIT1002_03764 at 4207.451 kb on - strand, within MIT1002_03764 at 4207.521 kb on + strand, within MIT1002_03764 at 4207.548 kb on + strand, within MIT1002_03764 at 4207.548 kb on + strand, within MIT1002_03764 at 4207.551 kb on - strand, within MIT1002_03764 at 4207.556 kb on - strand, within MIT1002_03764 at 4207.556 kb on - strand, within MIT1002_03764 at 4207.558 kb on + strand, within MIT1002_03764 at 4207.566 kb on - strand, within MIT1002_03764 at 4207.579 kb on + strand, within MIT1002_03764 at 4207.600 kb on - strand, within MIT1002_03764 at 4207.660 kb on - strand, within MIT1002_03764 at 4207.771 kb on - strand, within MIT1002_03764 at 4207.787 kb on + strand, within MIT1002_03764 at 4207.820 kb on - strand, within MIT1002_03764 at 4207.858 kb on + strand, within MIT1002_03764 at 4207.868 kb on - strand, within MIT1002_03764 at 4207.898 kb on - strand, within MIT1002_03764 at 4207.907 kb on + strand, within MIT1002_03764 at 4207.915 kb on - strand, within MIT1002_03764 at 4207.915 kb on - strand, within MIT1002_03764 at 4207.939 kb on + strand, within MIT1002_03764 at 4207.939 kb on + strand, within MIT1002_03764 at 4207.939 kb on + strand, within MIT1002_03764 at 4207.939 kb on + strand, within MIT1002_03764 at 4207.947 kb on - strand, within MIT1002_03764 at 4208.027 kb on - strand, within MIT1002_03764 at 4208.052 kb on + strand, within MIT1002_03764 at 4208.061 kb on + strand, within MIT1002_03764 at 4208.094 kb on - strand, within MIT1002_03764 at 4208.105 kb on + strand, within MIT1002_03764 at 4208.171 kb on + strand, within MIT1002_03764 at 4208.262 kb on + strand, within MIT1002_03764 at 4208.262 kb on - strand, within MIT1002_03764 at 4208.299 kb on + strand at 4208.309 kb on + strand at 4208.348 kb on + strand at 4208.363 kb on + strand at 4208.371 kb on - strand at 4208.441 kb on + strand at 4208.526 kb on + strand at 4208.550 kb on + strand at 4208.556 kb on - strand at 4208.626 kb on - strand at 4208.644 kb on - strand at 4208.732 kb on + strand at 4208.767 kb on + strand at 4208.775 kb on - strand at 4208.814 kb on - strand at 4208.943 kb on + strand, within MIT1002_03765 at 4208.953 kb on + strand, within MIT1002_03765 at 4208.975 kb on - strand, within MIT1002_03765 at 4209.111 kb on + strand, within MIT1002_03765 at 4209.113 kb on + strand, within MIT1002_03765 at 4209.119 kb on - strand, within MIT1002_03765 at 4209.147 kb on + strand, within MIT1002_03765 at 4209.217 kb on - strand, within MIT1002_03765 at 4209.323 kb on + strand, within MIT1002_03765 at 4209.367 kb on - strand, within MIT1002_03765 at 4209.368 kb on - strand, within MIT1002_03765 at 4209.398 kb on + strand, within MIT1002_03765 at 4209.427 kb on + strand, within MIT1002_03765 at 4209.445 kb on - strand, within MIT1002_03765
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 4,205,215 + +0.3 4,205,236 + +0.1 4,205,271 + MIT1002_03763 0.14 -1.2 4,205,281 + MIT1002_03763 0.15 -0.9 4,205,289 - MIT1002_03763 0.16 +0.0 4,205,332 - MIT1002_03763 0.22 +2.6 4,205,347 + MIT1002_03763 0.25 -0.5 4,205,364 + MIT1002_03763 0.27 +0.0 4,205,510 - MIT1002_03763 0.48 -0.2 4,205,516 - MIT1002_03763 0.49 +0.5 4,205,551 - MIT1002_03763 0.53 -0.1 4,205,560 + MIT1002_03763 0.55 -0.5 4,205,560 + MIT1002_03763 0.55 +0.3 4,205,568 - MIT1002_03763 0.56 -0.2 4,205,608 - MIT1002_03763 0.62 -0.8 4,205,630 + MIT1002_03763 0.65 -0.4 4,205,638 - MIT1002_03763 0.66 -0.2 4,205,659 - MIT1002_03763 0.69 -0.3 4,205,732 + MIT1002_03763 0.79 +1.6 4,205,740 - MIT1002_03763 0.80 +1.0 4,205,746 + MIT1002_03763 0.81 +0.3 4,205,746 + MIT1002_03763 0.81 -1.2 4,205,746 + MIT1002_03763 0.81 +0.3 4,205,746 + MIT1002_03763 0.81 +0.8 4,205,754 - MIT1002_03763 0.82 +0.0 4,205,754 - MIT1002_03763 0.82 -0.2 4,206,027 + -0.2 4,206,085 + -0.1 4,206,171 - -1.0 4,206,404 + MIT1002_03764 0.18 +1.0 4,206,412 - MIT1002_03764 0.19 +1.5 4,206,462 + MIT1002_03764 0.21 +0.8 4,206,463 - MIT1002_03764 0.21 +0.0 4,206,470 - MIT1002_03764 0.21 +2.6 4,206,509 + MIT1002_03764 0.22 +1.1 4,206,549 + MIT1002_03764 0.24 +0.3 4,206,552 - MIT1002_03764 0.24 -1.9 4,206,554 + MIT1002_03764 0.24 -0.5 4,206,557 - MIT1002_03764 0.24 +0.1 4,206,557 - MIT1002_03764 0.24 +1.7 4,206,599 + MIT1002_03764 0.26 +0.8 4,206,653 - MIT1002_03764 0.28 +0.5 4,206,678 + MIT1002_03764 0.29 +0.4 4,206,729 - MIT1002_03764 0.31 -0.0 4,206,781 + MIT1002_03764 0.33 +0.0 4,206,789 - MIT1002_03764 0.33 -1.6 4,206,801 + MIT1002_03764 0.33 +0.4 4,206,871 + MIT1002_03764 0.36 -0.5 4,206,908 + MIT1002_03764 0.38 +0.4 4,206,931 + MIT1002_03764 0.38 +0.7 4,206,934 - MIT1002_03764 0.39 +0.7 4,207,069 + MIT1002_03764 0.44 +1.5 4,207,120 + MIT1002_03764 0.46 -0.8 4,207,128 - MIT1002_03764 0.46 -0.3 4,207,182 + MIT1002_03764 0.48 +2.6 4,207,230 - MIT1002_03764 0.50 -1.2 4,207,285 - MIT1002_03764 0.52 -0.1 4,207,287 + MIT1002_03764 0.52 -1.6 4,207,322 + MIT1002_03764 0.53 -1.2 4,207,325 - MIT1002_03764 0.53 +2.4 4,207,406 + MIT1002_03764 0.56 -0.4 4,207,419 - MIT1002_03764 0.57 -1.7 4,207,419 - MIT1002_03764 0.57 -2.0 4,207,419 - MIT1002_03764 0.57 -1.4 4,207,437 + MIT1002_03764 0.58 -2.2 4,207,438 - MIT1002_03764 0.58 +0.0 4,207,443 + MIT1002_03764 0.58 -1.8 4,207,451 - MIT1002_03764 0.58 +1.4 4,207,521 + MIT1002_03764 0.61 +0.4 4,207,548 + MIT1002_03764 0.62 -0.7 4,207,548 + MIT1002_03764 0.62 +0.1 4,207,551 - MIT1002_03764 0.62 +1.0 4,207,556 - MIT1002_03764 0.62 +2.4 4,207,556 - MIT1002_03764 0.62 -0.3 4,207,558 + MIT1002_03764 0.62 -0.5 4,207,566 - MIT1002_03764 0.63 +0.5 4,207,579 + MIT1002_03764 0.63 +0.8 4,207,600 - MIT1002_03764 0.64 +0.9 4,207,660 - MIT1002_03764 0.66 -0.3 4,207,771 - MIT1002_03764 0.70 -1.1 4,207,787 + MIT1002_03764 0.71 -0.2 4,207,820 - MIT1002_03764 0.72 -0.1 4,207,858 + MIT1002_03764 0.74 +1.7 4,207,868 - MIT1002_03764 0.74 +0.8 4,207,898 - MIT1002_03764 0.75 -0.3 4,207,907 + MIT1002_03764 0.75 +0.0 4,207,915 - MIT1002_03764 0.76 -1.5 4,207,915 - MIT1002_03764 0.76 -1.5 4,207,939 + MIT1002_03764 0.77 +0.3 4,207,939 + MIT1002_03764 0.77 +2.3 4,207,939 + MIT1002_03764 0.77 -0.1 4,207,939 + MIT1002_03764 0.77 +1.0 4,207,947 - MIT1002_03764 0.77 -0.0 4,208,027 - MIT1002_03764 0.80 +2.0 4,208,052 + MIT1002_03764 0.81 +1.2 4,208,061 + MIT1002_03764 0.81 -1.6 4,208,094 - MIT1002_03764 0.83 -0.3 4,208,105 + MIT1002_03764 0.83 -0.7 4,208,171 + MIT1002_03764 0.85 -0.1 4,208,262 + MIT1002_03764 0.89 +0.4 4,208,262 - MIT1002_03764 0.89 +0.7 4,208,299 + +0.4 4,208,309 + -0.2 4,208,348 + +1.0 4,208,363 + +0.1 4,208,371 - -0.8 4,208,441 + -1.7 4,208,526 + +0.1 4,208,550 + -1.0 4,208,556 - -0.2 4,208,626 - -1.8 4,208,644 - -2.3 4,208,732 + +1.8 4,208,767 + -1.2 4,208,775 - -0.4 4,208,814 - -1.0 4,208,943 + MIT1002_03765 0.14 +0.8 4,208,953 + MIT1002_03765 0.15 +0.4 4,208,975 - MIT1002_03765 0.17 +1.3 4,209,111 + MIT1002_03765 0.28 -0.1 4,209,113 + MIT1002_03765 0.29 +0.3 4,209,119 - MIT1002_03765 0.29 -0.5 4,209,147 + MIT1002_03765 0.31 +0.2 4,209,217 - MIT1002_03765 0.37 +0.7 4,209,323 + MIT1002_03765 0.46 -0.9 4,209,367 - MIT1002_03765 0.50 +1.0 4,209,368 - MIT1002_03765 0.50 -0.6 4,209,398 + MIT1002_03765 0.53 -0.6 4,209,427 + MIT1002_03765 0.55 +1.2 4,209,445 - MIT1002_03765 0.57 +0.1
Or see this region's nucleotide sequence