Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03760 and MIT1002_03761 overlap by 14 nucleotides MIT1002_03761 and MIT1002_03762 are separated by 215 nucleotides
MIT1002_03760: MIT1002_03760 - Putative agmatine deiminase, at 4,201,771 to 4,202,835
_03760
MIT1002_03761: MIT1002_03761 - N-carbamoyl-D-amino acid hydrolase, at 4,202,822 to 4,203,715
_03761
MIT1002_03762: MIT1002_03762 - Transposase DDE domain protein, at 4,203,931 to 4,205,133
_03762
Position (kb) 4202
4203
4204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4201.855 kb on + strand at 4201.855 kb on + strand at 4201.884 kb on - strand, within MIT1002_03760 at 4201.886 kb on + strand, within MIT1002_03760 at 4201.886 kb on + strand, within MIT1002_03760 at 4201.932 kb on - strand, within MIT1002_03760 at 4201.955 kb on - strand, within MIT1002_03760 at 4202.041 kb on + strand, within MIT1002_03760 at 4202.123 kb on - strand, within MIT1002_03760 at 4202.174 kb on - strand, within MIT1002_03760 at 4202.174 kb on - strand, within MIT1002_03760 at 4202.174 kb on - strand, within MIT1002_03760 at 4202.241 kb on + strand, within MIT1002_03760 at 4202.246 kb on + strand, within MIT1002_03760 at 4202.246 kb on - strand, within MIT1002_03760 at 4202.264 kb on - strand, within MIT1002_03760 at 4202.264 kb on - strand, within MIT1002_03760 at 4202.270 kb on - strand, within MIT1002_03760 at 4202.281 kb on + strand, within MIT1002_03760 at 4202.289 kb on + strand, within MIT1002_03760 at 4202.290 kb on - strand, within MIT1002_03760 at 4202.399 kb on + strand, within MIT1002_03760 at 4202.426 kb on - strand, within MIT1002_03760 at 4202.451 kb on - strand, within MIT1002_03760 at 4202.451 kb on - strand, within MIT1002_03760 at 4202.504 kb on + strand, within MIT1002_03760 at 4202.504 kb on + strand, within MIT1002_03760 at 4202.504 kb on + strand, within MIT1002_03760 at 4202.504 kb on + strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.512 kb on - strand, within MIT1002_03760 at 4202.552 kb on - strand, within MIT1002_03760 at 4202.676 kb on - strand, within MIT1002_03760 at 4202.736 kb on - strand at 4202.836 kb on + strand at 4202.858 kb on - strand at 4202.858 kb on - strand at 4202.957 kb on + strand, within MIT1002_03761 at 4202.962 kb on + strand, within MIT1002_03761 at 4202.970 kb on - strand, within MIT1002_03761 at 4202.970 kb on - strand, within MIT1002_03761 at 4203.108 kb on + strand, within MIT1002_03761 at 4203.134 kb on + strand, within MIT1002_03761 at 4203.280 kb on + strand, within MIT1002_03761 at 4203.293 kb on + strand, within MIT1002_03761 at 4203.357 kb on - strand, within MIT1002_03761 at 4203.412 kb on - strand, within MIT1002_03761 at 4203.422 kb on - strand, within MIT1002_03761 at 4203.436 kb on + strand, within MIT1002_03761 at 4203.436 kb on + strand, within MIT1002_03761 at 4203.454 kb on - strand, within MIT1002_03761 at 4203.533 kb on + strand, within MIT1002_03761 at 4203.549 kb on - strand, within MIT1002_03761 at 4203.589 kb on + strand, within MIT1002_03761 at 4203.635 kb on - strand at 4203.637 kb on + strand at 4203.637 kb on + strand at 4203.646 kb on + strand at 4203.695 kb on + strand at 4203.736 kb on - strand at 4203.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 4,201,855 + -0.2 4,201,855 + +0.6 4,201,884 - MIT1002_03760 0.11 -0.5 4,201,886 + MIT1002_03760 0.11 +1.8 4,201,886 + MIT1002_03760 0.11 -0.7 4,201,932 - MIT1002_03760 0.15 -0.6 4,201,955 - MIT1002_03760 0.17 -2.2 4,202,041 + MIT1002_03760 0.25 +0.3 4,202,123 - MIT1002_03760 0.33 -1.5 4,202,174 - MIT1002_03760 0.38 -0.3 4,202,174 - MIT1002_03760 0.38 -0.3 4,202,174 - MIT1002_03760 0.38 +0.4 4,202,241 + MIT1002_03760 0.44 -1.6 4,202,246 + MIT1002_03760 0.45 +1.0 4,202,246 - MIT1002_03760 0.45 +0.0 4,202,264 - MIT1002_03760 0.46 -0.5 4,202,264 - MIT1002_03760 0.46 +0.4 4,202,270 - MIT1002_03760 0.47 -1.3 4,202,281 + MIT1002_03760 0.48 -2.0 4,202,289 + MIT1002_03760 0.49 +0.7 4,202,290 - MIT1002_03760 0.49 -0.3 4,202,399 + MIT1002_03760 0.59 -0.5 4,202,426 - MIT1002_03760 0.62 -0.6 4,202,451 - MIT1002_03760 0.64 -0.2 4,202,451 - MIT1002_03760 0.64 -1.2 4,202,504 + MIT1002_03760 0.69 -1.8 4,202,504 + MIT1002_03760 0.69 -1.9 4,202,504 + MIT1002_03760 0.69 +0.7 4,202,504 + MIT1002_03760 0.69 -0.6 4,202,512 - MIT1002_03760 0.70 +1.1 4,202,512 - MIT1002_03760 0.70 +0.3 4,202,512 - MIT1002_03760 0.70 -1.6 4,202,512 - MIT1002_03760 0.70 -1.4 4,202,512 - MIT1002_03760 0.70 +1.4 4,202,512 - MIT1002_03760 0.70 +0.6 4,202,552 - MIT1002_03760 0.73 -1.0 4,202,676 - MIT1002_03760 0.85 -2.8 4,202,736 - +0.2 4,202,836 + +0.1 4,202,858 - -0.2 4,202,858 - -0.5 4,202,957 + MIT1002_03761 0.15 -0.3 4,202,962 + MIT1002_03761 0.16 -0.2 4,202,970 - MIT1002_03761 0.17 +0.4 4,202,970 - MIT1002_03761 0.17 -0.1 4,203,108 + MIT1002_03761 0.32 +1.3 4,203,134 + MIT1002_03761 0.35 -2.0 4,203,280 + MIT1002_03761 0.51 -1.4 4,203,293 + MIT1002_03761 0.53 -0.1 4,203,357 - MIT1002_03761 0.60 -0.5 4,203,412 - MIT1002_03761 0.66 -1.4 4,203,422 - MIT1002_03761 0.67 -0.2 4,203,436 + MIT1002_03761 0.69 -0.4 4,203,436 + MIT1002_03761 0.69 -0.7 4,203,454 - MIT1002_03761 0.71 -0.6 4,203,533 + MIT1002_03761 0.80 -0.7 4,203,549 - MIT1002_03761 0.81 -2.0 4,203,589 + MIT1002_03761 0.86 -0.4 4,203,635 - +2.4 4,203,637 + -1.5 4,203,637 + +0.7 4,203,646 + -0.5 4,203,695 + -1.9 4,203,736 - -1.2 4,203,766 + +0.0
Or see this region's nucleotide sequence