Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03335

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
3,724,707	+		MIT1002_03333	0.29	+8.0
3,724,712	-		MIT1002_03333	0.30	+7.4
3,724,714	+		MIT1002_03333	0.30	+7.3
3,724,749	+		MIT1002_03333	0.35	+7.2
3,724,749	+		MIT1002_03333	0.35	+7.7
3,724,757	-		MIT1002_03333	0.36	+8.4
3,724,757	-		MIT1002_03333	0.36	+8.0
3,724,783	+		MIT1002_03333	0.39	+7.7
3,724,784	+		MIT1002_03333	0.39	+8.6
3,724,792	-		MIT1002_03333	0.40	+7.9
3,724,857	+		MIT1002_03333	0.49	+8.5
3,724,943	-		MIT1002_03333	0.60	+8.0
3,724,971	+		MIT1002_03333	0.64	+7.8
3,724,977	-		MIT1002_03333	0.65	+7.7
3,725,003	-		MIT1002_03333	0.68	+8.4
3,725,043	+		MIT1002_03333	0.73	+7.7
3,725,051	-		MIT1002_03333	0.74	+7.8
3,725,051	-		MIT1002_03333	0.74	+7.8
3,725,053	+		MIT1002_03333	0.75	+7.0
3,725,074	+		MIT1002_03333	0.77	+8.1
3,725,122	+		MIT1002_03333	0.84	+7.5
3,725,179	+				+8.0
3,725,240	+				+8.0
3,725,279	+				+8.4
3,725,310	-		MIT1002_03334	0.12	+9.2
3,725,319	-		MIT1002_03334	0.14	+8.0
3,725,338	-		MIT1002_03334	0.18	+7.3
3,725,370	+		MIT1002_03334	0.25	+8.1
3,725,494	+		MIT1002_03334	0.53	+7.4
3,725,503	+		MIT1002_03334	0.55	+9.1
3,725,508	+		MIT1002_03334	0.56	+7.3
3,725,533	-		MIT1002_03334	0.61	+7.9
3,725,545	-		MIT1002_03334	0.64	+5.4
3,725,623	+		MIT1002_03334	0.81	+8.4
3,725,689	-				+7.7
3,725,729	+				+8.2
3,725,739	-				+1.6
3,725,830	-		MIT1002_03335	0.32	+4.8
3,725,843	+		MIT1002_03335	0.36	+7.1
3,725,925	+		MIT1002_03335	0.56	+6.7
3,725,925	+		MIT1002_03335	0.56	+8.2
3,725,933	-		MIT1002_03335	0.59	+4.3
3,725,933	-		MIT1002_03335	0.59	+4.5
3,725,933	-		MIT1002_03335	0.59	+4.2
3,725,933	-		MIT1002_03335	0.59	+5.0
3,725,943	+		MIT1002_03335	0.61	+8.9
3,725,943	+		MIT1002_03335	0.61	+7.3
3,725,943	+		MIT1002_03335	0.61	+7.3
3,725,943	+		MIT1002_03335	0.61	+6.6
3,726,107	-				+0.4
3,726,148	+				+9.2
3,726,197	+				+8.0
3,726,199	-				+8.2
3,726,199	-				+7.4
3,726,205	+				+8.8
3,726,263	+				+8.3
3,726,367	+		MIT1002_03336	0.15	+7.5
3,726,367	+		MIT1002_03336	0.15	+8.1
3,726,549	+		MIT1002_03336	0.28	+7.5
3,726,586	+		MIT1002_03336	0.30	+8.0
3,726,586	+		MIT1002_03336	0.30	+8.1
3,726,586	+		MIT1002_03336	0.30	+8.0
3,726,586	+		MIT1002_03336	0.30	+8.0
3,726,594	-		MIT1002_03336	0.31	+8.0
3,726,594	-		MIT1002_03336	0.31	+6.5
3,726,594	-		MIT1002_03336	0.31	+8.3
3,726,594	-		MIT1002_03336	0.31	+8.1
3,726,637	+		MIT1002_03336	0.34	+8.0
3,726,765	-		MIT1002_03336	0.43	+8.1
3,726,795	+		MIT1002_03336	0.45	+8.6
3,726,852	+		MIT1002_03336	0.49	+8.0
3,726,880	+		MIT1002_03336	0.50	+8.7
3,726,880	+		MIT1002_03336	0.50	+8.2
3,726,958	-		MIT1002_03336	0.56	+8.2
3,726,967	-		MIT1002_03336	0.57	+8.9
3,726,980	-		MIT1002_03336	0.57	+9.0
3,726,990	-		MIT1002_03336	0.58	+9.1
3,727,027	-		MIT1002_03336	0.61	+8.2
3,727,060	+		MIT1002_03336	0.63	+8.2
3,727,095	+		MIT1002_03336	0.65	+9.1