Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03262

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
3,633,402	-		MIT1002_03260	0.69	+0.5
3,633,409	+		MIT1002_03260	0.69	+1.4
3,633,409	+		MIT1002_03260	0.69	+0.2
3,633,427	-		MIT1002_03260	0.71	-0.3
3,633,434	-		MIT1002_03260	0.71	+1.3
3,633,573	-		MIT1002_03260	0.83	+0.5
3,633,597	-		MIT1002_03260	0.85	+0.2
3,633,699	-				-2.1
3,633,712	-				+0.1
3,633,713	-				+0.2
3,633,764	+				-0.4
3,633,805	+				-0.6
3,633,895	+				-0.4
3,633,895	+				-0.3
3,633,895	+				+0.9
3,633,895	+				-3.0
3,633,903	-				+2.8
3,633,903	-				-1.7
3,633,903	-				-3.9
3,633,903	-				+0.5
3,633,950	+		MIT1002_03261	0.16	-0.2
3,634,003	+		MIT1002_03261	0.32	-1.6
3,634,026	-		MIT1002_03261	0.39	+1.4
3,634,085	-		MIT1002_03261	0.56	+0.2
3,634,110	+		MIT1002_03261	0.64	+1.6
3,634,117	+		MIT1002_03261	0.66	-0.1
3,634,117	+		MIT1002_03261	0.66	+1.8
3,634,120	-		MIT1002_03261	0.67	+0.5
3,634,125	-		MIT1002_03261	0.68	+1.2
3,634,125	-		MIT1002_03261	0.68	-0.8
3,634,141	+		MIT1002_03261	0.73	-0.6
3,634,158	+		MIT1002_03261	0.78	-1.4
3,634,241	+				-0.9
3,634,249	-				-1.8
3,634,291	-				-0.1
3,634,316	+				+0.9
3,634,331	+				-0.4
3,634,333	+				-0.0
3,634,333	+				-0.6
3,634,339	-				+0.1
3,634,341	-				+1.8
3,634,351	-				-1.1
3,634,351	-				+0.0
3,634,392	-				+0.3
3,634,405	+				-0.2
3,634,410	+				+0.8
3,634,410	+				-1.1
3,634,410	+				-0.8
3,634,410	+				-0.4
3,634,418	-				-1.0
3,634,423	+				+2.2
3,634,583	+		MIT1002_03262	0.47	-0.2
3,634,591	-		MIT1002_03262	0.49	-1.3
3,634,677	-		MIT1002_03262	0.70	+0.3
3,634,699	-		MIT1002_03262	0.75	-0.8
3,634,706	-		MIT1002_03262	0.76	-0.2
3,634,769	-				+1.4
3,634,894	+				+0.5
3,634,894	+				-0.9
3,634,904	+				+0.0
3,634,917	-				-1.1
3,634,990	-				+1.8
3,635,016	+				-2.2
3,635,052	+				+1.2
3,635,170	+		MIT1002_03263	0.67	-0.5
3,635,170	+		MIT1002_03263	0.67	-1.3
3,635,170	+		MIT1002_03263	0.67	+0.8
3,635,178	-		MIT1002_03263	0.71	+0.7
3,635,225	-				+1.8
3,635,249	+				-0.9
3,635,257	-				+0.7
3,635,399	-				-0.4
3,635,480	+				+0.6
3,635,498	-				+1.4
3,635,534	+				+1.0
3,635,572	+				-1.2
3,635,616	-		MIT1002_03264	0.11	-0.0
3,635,619	+		MIT1002_03264	0.12	+1.4
3,635,644	-		MIT1002_03264	0.14	-0.9
3,635,661	+		MIT1002_03264	0.16	+0.9
3,635,691	+		MIT1002_03264	0.20	+0.6
3,635,691	+		MIT1002_03264	0.20	-0.1
3,635,699	-		MIT1002_03264	0.21	-0.4
3,635,699	-		MIT1002_03264	0.21	-0.2
3,635,701	-		MIT1002_03264	0.21	+0.5
3,635,721	+		MIT1002_03264	0.23	+0.1
3,635,724	-		MIT1002_03264	0.24	-0.2
3,635,729	-		MIT1002_03264	0.24	+0.6
3,635,746	-		MIT1002_03264	0.26	+1.0
3,635,779	+		MIT1002_03264	0.30	-1.2
3,635,787	+		MIT1002_03264	0.31	-0.3
3,635,792	-		MIT1002_03264	0.31	-1.1