Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03077 and MIT1002_03078 are separated by 15 nucleotides MIT1002_03078 and MIT1002_03079 are separated by 22 nucleotides MIT1002_03079 and MIT1002_03080 are separated by 245 nucleotides
MIT1002_03077: MIT1002_03077 - hypothetical protein, at 3,429,922 to 3,430,698
_03077
MIT1002_03078: MIT1002_03078 - hypothetical protein, at 3,430,714 to 3,430,938
_03078
MIT1002_03079: MIT1002_03079 - hypothetical protein, at 3,430,961 to 3,431,095
_03079
MIT1002_03080: MIT1002_03080 - Transaldolase B, at 3,431,341 to 3,432,300
_03080
Position (kb) 3430
3431
3432 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 3429.964 kb on + strand at 3429.964 kb on + strand at 3429.964 kb on + strand at 3430.022 kb on - strand, within MIT1002_03077 at 3430.023 kb on + strand, within MIT1002_03077 at 3430.023 kb on - strand, within MIT1002_03077 at 3430.053 kb on + strand, within MIT1002_03077 at 3430.151 kb on + strand, within MIT1002_03077 at 3430.166 kb on + strand, within MIT1002_03077 at 3430.166 kb on + strand, within MIT1002_03077 at 3430.166 kb on + strand, within MIT1002_03077 at 3430.174 kb on - strand, within MIT1002_03077 at 3430.195 kb on + strand, within MIT1002_03077 at 3430.198 kb on - strand, within MIT1002_03077 at 3430.198 kb on - strand, within MIT1002_03077 at 3430.203 kb on + strand, within MIT1002_03077 at 3430.280 kb on - strand, within MIT1002_03077 at 3430.280 kb on - strand, within MIT1002_03077 at 3430.354 kb on + strand, within MIT1002_03077 at 3430.354 kb on + strand, within MIT1002_03077 at 3430.354 kb on + strand, within MIT1002_03077 at 3430.354 kb on + strand, within MIT1002_03077 at 3430.362 kb on - strand, within MIT1002_03077 at 3430.362 kb on - strand, within MIT1002_03077 at 3430.362 kb on - strand, within MIT1002_03077 at 3430.362 kb on - strand, within MIT1002_03077 at 3430.362 kb on - strand, within MIT1002_03077 at 3430.423 kb on + strand, within MIT1002_03077 at 3430.445 kb on + strand, within MIT1002_03077 at 3430.571 kb on + strand, within MIT1002_03077 at 3430.696 kb on + strand at 3430.704 kb on - strand at 3430.713 kb on - strand at 3430.727 kb on + strand at 3430.888 kb on + strand, within MIT1002_03078 at 3430.896 kb on - strand, within MIT1002_03078 at 3430.896 kb on - strand, within MIT1002_03078 at 3430.901 kb on + strand, within MIT1002_03078 at 3430.901 kb on + strand, within MIT1002_03078 at 3430.901 kb on + strand, within MIT1002_03078 at 3430.901 kb on + strand, within MIT1002_03078 at 3430.978 kb on + strand, within MIT1002_03079 at 3430.978 kb on + strand, within MIT1002_03079 at 3430.989 kb on + strand, within MIT1002_03079 at 3431.154 kb on + strand at 3431.154 kb on + strand at 3431.252 kb on + strand at 3431.252 kb on + strand at 3431.252 kb on + strand at 3431.252 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 3,429,964 + -0.1 3,429,964 + -0.5 3,429,964 + +0.8 3,430,022 - MIT1002_03077 0.13 -0.4 3,430,023 + MIT1002_03077 0.13 -0.2 3,430,023 - MIT1002_03077 0.13 +11.1 3,430,053 + MIT1002_03077 0.17 +0.0 3,430,151 + MIT1002_03077 0.29 -0.5 3,430,166 + MIT1002_03077 0.31 -0.9 3,430,166 + MIT1002_03077 0.31 +0.0 3,430,166 + MIT1002_03077 0.31 +0.0 3,430,174 - MIT1002_03077 0.32 +1.3 3,430,195 + MIT1002_03077 0.35 +0.8 3,430,198 - MIT1002_03077 0.36 +0.7 3,430,198 - MIT1002_03077 0.36 -0.1 3,430,203 + MIT1002_03077 0.36 -0.5 3,430,280 - MIT1002_03077 0.46 +0.3 3,430,280 - MIT1002_03077 0.46 +2.0 3,430,354 + MIT1002_03077 0.56 -0.8 3,430,354 + MIT1002_03077 0.56 +0.0 3,430,354 + MIT1002_03077 0.56 +0.2 3,430,354 + MIT1002_03077 0.56 -1.2 3,430,362 - MIT1002_03077 0.57 -0.3 3,430,362 - MIT1002_03077 0.57 +0.7 3,430,362 - MIT1002_03077 0.57 -0.5 3,430,362 - MIT1002_03077 0.57 +0.7 3,430,362 - MIT1002_03077 0.57 -0.3 3,430,423 + MIT1002_03077 0.64 -0.9 3,430,445 + MIT1002_03077 0.67 +0.2 3,430,571 + MIT1002_03077 0.84 +0.0 3,430,696 + -1.5 3,430,704 - -0.9 3,430,713 - +2.4 3,430,727 + -2.2 3,430,888 + MIT1002_03078 0.77 +0.8 3,430,896 - MIT1002_03078 0.81 -1.1 3,430,896 - MIT1002_03078 0.81 -0.1 3,430,901 + MIT1002_03078 0.83 -0.1 3,430,901 + MIT1002_03078 0.83 +3.0 3,430,901 + MIT1002_03078 0.83 -0.3 3,430,901 + MIT1002_03078 0.83 +1.1 3,430,978 + MIT1002_03079 0.13 -0.8 3,430,978 + MIT1002_03079 0.13 +1.0 3,430,989 + MIT1002_03079 0.21 +0.8 3,431,154 + +1.2 3,431,154 + -1.0 3,431,252 + -0.4 3,431,252 + +0.8 3,431,252 + -1.6 3,431,252 + -0.2
Or see this region's nucleotide sequence