Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02924

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
3,248,227	-				-0.6
3,248,243	+				+0.2
3,248,273	+				-0.8
3,248,353	+				+0.6
3,248,353	+				+1.1
3,248,377	+				-0.8
3,248,377	+				-1.0
3,248,385	-				-1.4
3,248,385	-				-0.3
3,248,397	-				+2.7
3,248,457	-				+0.3
3,248,485	-		MIT1002_02923	0.13	+2.6
3,248,506	+		MIT1002_02923	0.17	-1.4
3,248,514	-		MIT1002_02923	0.18	-0.0
3,248,536	+		MIT1002_02923	0.21	-0.9
3,248,548	+		MIT1002_02923	0.23	+0.2
3,248,549	+		MIT1002_02923	0.23	+1.5
3,248,621	+		MIT1002_02923	0.34	-0.0
3,248,694	-		MIT1002_02923	0.45	-0.4
3,248,703	+		MIT1002_02923	0.47	+2.9
3,248,711	-		MIT1002_02923	0.48	-0.4
3,248,711	-		MIT1002_02923	0.48	+0.6
3,248,711	-		MIT1002_02923	0.48	+0.2
3,248,717	-		MIT1002_02923	0.49	-1.0
3,248,727	-		MIT1002_02923	0.50	+1.3
3,248,789	+		MIT1002_02923	0.60	+0.2
3,248,816	-		MIT1002_02923	0.64	-0.9
3,248,817	-		MIT1002_02923	0.64	-0.4
3,248,892	+		MIT1002_02923	0.75	+1.7
3,248,953	-		MIT1002_02923	0.84	-0.0
3,248,960	-		MIT1002_02923	0.85	+1.2
3,249,188	-				-1.9
3,249,194	-				-1.3
3,249,221	+				-0.1
3,249,301	+				-0.2
3,249,301	-				-2.5
3,249,322	+				-1.5
3,249,357	+				+0.0
3,249,365	-				-0.1
3,249,365	-				+1.9
3,249,421	-				+0.5
3,249,457	+		MIT1002_02924	0.12	-0.7
3,249,465	-		MIT1002_02924	0.12	+3.0
3,249,499	-		MIT1002_02924	0.14	+0.5
3,249,514	-		MIT1002_02924	0.15	-0.4
3,249,567	+		MIT1002_02924	0.17	-0.3
3,249,646	-		MIT1002_02924	0.21	-2.4
3,249,655	+		MIT1002_02924	0.22	+0.4
3,249,683	+		MIT1002_02924	0.23	-1.5
3,249,721	+		MIT1002_02924	0.25	+0.7
3,249,721	+		MIT1002_02924	0.25	+3.1
3,249,729	+		MIT1002_02924	0.25	-0.6
3,249,990	-		MIT1002_02924	0.39	+2.8
3,250,041	+		MIT1002_02924	0.41	+0.2
3,250,049	-		MIT1002_02924	0.41	-0.5
3,250,087	+		MIT1002_02924	0.43	+0.1
3,250,114	+		MIT1002_02924	0.45	+1.8
3,250,122	-		MIT1002_02924	0.45	+0.5
3,250,167	+		MIT1002_02924	0.47	+0.1
3,250,192	+		MIT1002_02924	0.49	+0.2
3,250,208	-		MIT1002_02924	0.49	-1.2
3,250,299	-		MIT1002_02924	0.54	-2.3
3,250,299	-		MIT1002_02924	0.54	+0.2
3,250,304	-		MIT1002_02924	0.54	+0.0
3,250,313	+		MIT1002_02924	0.55	-0.4
3,250,397	-		MIT1002_02924	0.59	+0.7
3,250,427	+		MIT1002_02924	0.61	-0.3
3,250,450	+		MIT1002_02924	0.62	+1.1
3,250,542	+		MIT1002_02924	0.66	-0.4
3,250,767	+		MIT1002_02924	0.78	+0.2
3,250,769	-		MIT1002_02924	0.78	-0.1
3,250,772	+		MIT1002_02924	0.78	+0.9
3,250,777	+		MIT1002_02924	0.78	+1.0
3,250,777	+		MIT1002_02924	0.78	-2.3
3,250,785	-		MIT1002_02924	0.79	-0.7
3,250,785	-		MIT1002_02924	0.79	+3.5
3,250,814	+		MIT1002_02924	0.80	+1.0
3,250,822	-		MIT1002_02924	0.80	-0.6
3,250,822	-		MIT1002_02924	0.80	+0.6
3,250,849	+		MIT1002_02924	0.82	-0.2
3,250,907	+		MIT1002_02924	0.85	+0.7
3,250,973	-		MIT1002_02924	0.88	+0.2
3,250,975	+		MIT1002_02924	0.88	+0.9
3,250,983	-		MIT1002_02924	0.89	+1.3
3,250,999	+		MIT1002_02924	0.89	-0.1
3,251,119	+				+2.0
3,251,122	+				-0.9
3,251,217	-				-0.6
3,251,219	+				-1.2
3,251,245	+				+0.6
3,251,245	+				+0.3
3,251,253	-				+0.6
3,251,253	-				+0.2
3,251,253	-				-2.3
3,251,547	+		MIT1002_02925	0.44	+0.6
3,251,648	+		MIT1002_02925	0.70	-0.9
3,251,720	-		MIT1002_02925	0.88	+0.6
3,251,731	-				+1.3
3,251,776	-				+0.0
3,251,784	-				+0.6
3,251,796	-				-0.1
3,251,806	+				+0.4
3,251,861	+				+0.1
3,251,861	+				-0.6
3,251,868	-				-0.7
3,251,899	-		MIT1002_02926	0.11	-0.2
3,251,950	-		MIT1002_02926	0.15	-0.7
3,252,040	+		MIT1002_02926	0.23	+0.9
3,252,040	+		MIT1002_02926	0.23	+0.3
3,252,048	-		MIT1002_02926	0.23	+0.1
3,252,048	-		MIT1002_02926	0.23	+0.2
3,252,090	-		MIT1002_02926	0.27	-1.4
3,252,097	+		MIT1002_02926	0.27	+0.3
3,252,097	+		MIT1002_02926	0.27	-0.1
3,252,097	+		MIT1002_02926	0.27	-1.5
3,252,105	-		MIT1002_02926	0.28	-2.0
3,252,105	-		MIT1002_02926	0.28	-0.9
3,252,105	-		MIT1002_02926	0.28	-0.7
3,252,105	-		MIT1002_02926	0.28	-0.6
3,252,105	-		MIT1002_02926	0.28	-0.0
3,252,134	+		MIT1002_02926	0.30	+1.6
3,252,152	-		MIT1002_02926	0.32	+0.8
3,252,180	-		MIT1002_02926	0.34	+0.6
3,252,180	-		MIT1002_02926	0.34	-0.2
3,252,191	-		MIT1002_02926	0.35	+0.2