Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02434

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
2,717,536	-		MIT1002_02432	0.89	-0.2
2,717,609	+				+1.1
2,717,620	+				-0.9
2,717,656	-				-2.5
2,717,663	+				-1.6
2,717,749	+				-1.1
2,717,749	+				-2.0
2,717,757	-				+1.1
2,717,757	-				-1.1
2,717,759	+				-2.9
2,717,759	+				+1.6
2,717,767	-				+0.8
2,717,778	+		MIT1002_02433	0.11	+1.0
2,717,816	+		MIT1002_02433	0.17	+0.5
2,718,241	+		MIT1002_02433	0.84	+1.5
2,718,249	-		MIT1002_02433	0.85	-1.1
2,718,262	-		MIT1002_02433	0.87	-0.1
2,718,296	-				+0.4
2,718,321	-				-0.4
2,718,385	+				+1.5
2,718,385	+				-1.0
2,718,390	+				+0.1
2,718,393	-				+0.4
2,718,393	-				+0.3
2,718,398	-				+0.5
2,718,464	+		MIT1002_02434	0.13	+0.5
2,718,487	+		MIT1002_02434	0.15	+0.6
2,718,495	-		MIT1002_02434	0.16	+0.1
2,718,495	-		MIT1002_02434	0.16	-0.4
2,718,495	-		MIT1002_02434	0.16	-0.4
2,718,642	+		MIT1002_02434	0.31	-1.2
2,718,650	-		MIT1002_02434	0.32	+0.3
2,718,813	+		MIT1002_02434	0.49	+1.4
2,718,849	-		MIT1002_02434	0.52	-1.6
2,718,854	-		MIT1002_02434	0.53	-1.7
2,718,892	+		MIT1002_02434	0.57	+1.0
2,718,922	-		MIT1002_02434	0.60	-0.3
2,718,929	+		MIT1002_02434	0.60	-1.6
2,718,934	+		MIT1002_02434	0.61	+0.3
2,718,937	-		MIT1002_02434	0.61	+0.3
2,718,942	-		MIT1002_02434	0.62	+0.4
2,718,958	-		MIT1002_02434	0.63	+0.9
2,718,997	+		MIT1002_02434	0.67	+0.3
2,719,005	-		MIT1002_02434	0.68	+1.2
2,719,079	+		MIT1002_02434	0.76	+0.1
2,719,087	-		MIT1002_02434	0.77	+0.7
2,719,112	-		MIT1002_02434	0.79	+0.8
2,719,122	+		MIT1002_02434	0.80	+1.1
2,719,168	-		MIT1002_02434	0.85	+0.6
2,719,173	+		MIT1002_02434	0.86	-1.1
2,719,174	+		MIT1002_02434	0.86	-0.8
2,719,205	-		MIT1002_02434	0.89	+1.9
2,719,342	+				+0.3
2,719,389	-				-1.2
2,719,701	+				-0.4
2,719,726	+				+1.5
2,719,726	+				-1.0
2,719,726	+				-1.2
2,719,734	-				-1.9
2,719,734	-				-0.1
2,719,747	-				+0.1
2,719,773	-				-0.2
2,719,884	+		MIT1002_02435	0.21	+0.3
2,719,890	-		MIT1002_02435	0.23	-1.4
2,719,923	+		MIT1002_02435	0.29	+1.1
2,719,931	-		MIT1002_02435	0.31	-0.1
2,719,931	-		MIT1002_02435	0.31	-0.9
2,719,992	-		MIT1002_02435	0.43	-0.4
2,720,043	+		MIT1002_02435	0.53	+0.2
2,720,048	+		MIT1002_02435	0.54	-0.5
2,720,051	-		MIT1002_02435	0.55	+0.2
2,720,051	-		MIT1002_02435	0.55	-0.4
2,720,058	+		MIT1002_02435	0.56	+0.2
2,720,058	+		MIT1002_02435	0.56	-0.5
2,720,058	+		MIT1002_02435	0.56	-1.2
2,720,066	-		MIT1002_02435	0.58	-0.9
2,720,066	-		MIT1002_02435	0.58	-1.0
2,720,188	+		MIT1002_02435	0.82	+1.6
2,720,194	+		MIT1002_02435	0.83	-1.9
2,720,195	-		MIT1002_02435	0.83	+0.1
2,720,199	+		MIT1002_02435	0.84	-0.7
2,720,222	-		MIT1002_02435	0.89	-1.9
2,720,302	+				-1.7