Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02202

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
2,460,944	+		MIT1002_02201	0.13	-0.5
2,460,952	-		MIT1002_02201	0.14	+1.2
2,460,952	-		MIT1002_02201	0.14	-0.3
2,460,959	+		MIT1002_02201	0.14	+1.1
2,460,959	+		MIT1002_02201	0.14	+0.9
2,460,967	-		MIT1002_02201	0.15	-0.1
2,460,976	+		MIT1002_02201	0.16	-1.9
2,460,981	+		MIT1002_02201	0.16	+0.9
2,460,983	+		MIT1002_02201	0.16	+1.1
2,461,106	+		MIT1002_02201	0.28	-0.2
2,461,155	-		MIT1002_02201	0.32	+1.1
2,461,174	+		MIT1002_02201	0.34	-0.1
2,461,174	+		MIT1002_02201	0.34	+0.7
2,461,174	+		MIT1002_02201	0.34	-2.2
2,461,176	+		MIT1002_02201	0.34	+0.1
2,461,181	+		MIT1002_02201	0.34	+0.2
2,461,181	+		MIT1002_02201	0.34	-0.4
2,461,213	+		MIT1002_02201	0.37	-1.4
2,461,239	-		MIT1002_02201	0.40	+0.1
2,461,239	-		MIT1002_02201	0.40	+0.3
2,461,321	-		MIT1002_02201	0.47	-0.4
2,461,349	+		MIT1002_02201	0.50	-2.0
2,461,350	+		MIT1002_02201	0.50	+0.3
2,461,442	-		MIT1002_02201	0.58	+1.3
2,461,489	+		MIT1002_02201	0.62	+0.4
2,461,489	+		MIT1002_02201	0.62	-1.7
2,461,497	-		MIT1002_02201	0.63	+0.5
2,461,508	+		MIT1002_02201	0.64	-0.4
2,461,626	+		MIT1002_02201	0.75	-0.7
2,461,677	+		MIT1002_02201	0.80	-0.5
2,461,679	-		MIT1002_02201	0.80	+0.3
2,461,685	-		MIT1002_02201	0.80	-1.1
2,461,742	+		MIT1002_02201	0.86	+1.0
2,461,857	+				-0.9
2,461,862	+				+0.6
2,461,894	+				+0.0
2,461,894	+				+0.4
2,461,894	+				+0.8
2,461,902	-				-0.1
2,461,902	-				-0.3
2,461,912	-				+0.6
2,461,992	+				+0.4
2,461,993	+				+0.8
2,461,993	+				+1.0
2,462,001	-				+1.8
2,462,018	-				-1.3
2,462,050	+				-0.7
2,462,059	+				-1.3
2,462,072	+				+0.1
2,462,157	+				-0.7
2,462,211	+		MIT1002_02202	0.12	+0.0
2,462,211	+		MIT1002_02202	0.12	-0.3
2,462,232	+		MIT1002_02202	0.13	+1.7
2,462,330	+		MIT1002_02202	0.17	+1.9
2,462,448	+		MIT1002_02202	0.22	+0.7
2,462,527	-		MIT1002_02202	0.25	+0.1
2,462,568	-		MIT1002_02202	0.27	+0.7
2,462,669	+		MIT1002_02202	0.31	+0.3
2,462,679	+		MIT1002_02202	0.32	+0.3
2,462,679	+		MIT1002_02202	0.32	-1.6
2,462,734	+		MIT1002_02202	0.34	+0.0
2,462,742	-		MIT1002_02202	0.34	+0.3
2,462,742	-		MIT1002_02202	0.34	-0.7
2,462,773	-		MIT1002_02202	0.36	+0.5
2,462,773	-		MIT1002_02202	0.36	+0.1
2,462,773	-		MIT1002_02202	0.36	+0.9
2,462,837	+		MIT1002_02202	0.39	+0.0
2,462,839	-		MIT1002_02202	0.39	-1.2
2,462,935	-		MIT1002_02202	0.43	+0.3
2,462,935	-		MIT1002_02202	0.43	-2.9
2,462,937	+		MIT1002_02202	0.43	-0.4
2,462,945	-		MIT1002_02202	0.43	+0.9
2,462,945	-		MIT1002_02202	0.43	-0.5
2,462,945	-		MIT1002_02202	0.43	+1.9
2,463,005	-		MIT1002_02202	0.46	-0.7
2,463,020	+		MIT1002_02202	0.46	-0.8
2,463,058	+		MIT1002_02202	0.48	-1.0
2,463,145	-		MIT1002_02202	0.52	-0.5
2,463,156	-		MIT1002_02202	0.52	-0.6
2,463,162	+		MIT1002_02202	0.52	-2.4
2,463,170	-		MIT1002_02202	0.53	+1.5
2,463,399	+		MIT1002_02202	0.63	+0.7
2,463,407	-		MIT1002_02202	0.63	+0.4
2,463,436	+		MIT1002_02202	0.64	+2.3
2,463,436	+		MIT1002_02202	0.64	-0.4
2,463,798	+		MIT1002_02202	0.80	+1.9
2,463,802	+		MIT1002_02202	0.80	-1.2
2,463,802	+		MIT1002_02202	0.80	-0.6
2,463,819	-		MIT1002_02202	0.81	+0.6
2,463,819	-		MIT1002_02202	0.81	+0.6
2,463,838	-		MIT1002_02202	0.81	-0.2
2,463,894	-		MIT1002_02202	0.84	-1.0
2,463,914	-		MIT1002_02202	0.85	+1.3
2,464,098	-				+1.9
2,464,128	-				+0.5
2,464,183	-				+1.0
2,464,198	+				-0.7
2,464,206	-				-1.4
2,464,254	+				+2.4
2,464,262	-				+0.8
2,464,262	-				+0.4
2,464,266	+				+0.6
2,464,303	-				-1.4
2,464,320	-				-3.2
2,464,329	-				+1.4
2,464,329	-				+2.1
2,464,329	-				+0.3
2,464,335	+				-0.5
2,464,335	+				+3.0
2,464,375	-		MIT1002_02203	0.10	-0.2
2,464,395	+		MIT1002_02203	0.15	+0.3
2,464,828	+				+0.0
2,464,857	-				-1.1
2,464,929	-				+1.3
2,464,963	-				-0.6
2,464,974	+				-0.5
2,465,014	+		MIT1002_02204	0.14	+1.4
2,465,014	+		MIT1002_02204	0.14	-1.4
2,465,014	+		MIT1002_02204	0.14	-0.8
2,465,022	-		MIT1002_02204	0.15	+2.4
2,465,062	+		MIT1002_02204	0.19	+0.3
2,465,062	+		MIT1002_02204	0.19	-0.1
2,465,062	+		MIT1002_02204	0.19	-1.5
2,465,064	+		MIT1002_02204	0.19	-0.8
2,465,070	-		MIT1002_02204	0.20	-0.6
2,465,070	-		MIT1002_02204	0.20	-0.5
2,465,078	+		MIT1002_02204	0.21	+0.6
2,465,078	+		MIT1002_02204	0.21	-0.2
2,465,097	+		MIT1002_02204	0.23	-0.2
2,465,105	-		MIT1002_02204	0.24	-0.8
2,465,181	-		MIT1002_02204	0.33	+1.2