Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02001

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
2,236,073	-				+0.0
2,236,094	-				-0.5
2,236,094	-				+0.2
2,236,094	-				-0.5
2,236,094	-				-0.4
2,236,105	+				+0.8
2,236,172	+				+0.2
2,236,256	+				+0.5
2,236,268	+				-1.5
2,236,276	-				+1.3
2,236,276	-				-0.5
2,236,276	-				+0.0
2,236,361	-		MIT1002_02000	0.14	+1.3
2,236,381	+		MIT1002_02000	0.17	+0.9
2,236,389	-		MIT1002_02000	0.18	-0.3
2,236,390	+		MIT1002_02000	0.18	-0.1
2,236,391	-		MIT1002_02000	0.19	+0.1
2,236,398	-		MIT1002_02000	0.20	-0.7
2,236,403	-		MIT1002_02000	0.20	-1.3
2,236,405	+		MIT1002_02000	0.21	-1.8
2,236,406	-		MIT1002_02000	0.21	+0.5
2,236,409	+		MIT1002_02000	0.21	-1.3
2,236,429	+		MIT1002_02000	0.24	-0.5
2,236,443	+		MIT1002_02000	0.26	+0.0
2,236,444	+		MIT1002_02000	0.27	-1.4
2,236,446	-		MIT1002_02000	0.27	+0.0
2,236,503	-		MIT1002_02000	0.36	+1.6
2,236,516	-		MIT1002_02000	0.38	-0.2
2,236,536	+		MIT1002_02000	0.41	-2.4
2,236,553	+		MIT1002_02000	0.43	-1.1
2,236,553	+		MIT1002_02000	0.43	-1.3
2,236,561	-		MIT1002_02000	0.44	-0.8
2,236,663	+		MIT1002_02000	0.60	-0.3
2,236,694	+		MIT1002_02000	0.65	+0.3
2,236,702	-		MIT1002_02000	0.66	-0.6
2,236,729	-		MIT1002_02000	0.70	-1.2
2,236,758	+		MIT1002_02000	0.75	-0.2
2,236,771	+		MIT1002_02000	0.77	+1.0
2,236,771	+		MIT1002_02000	0.77	-0.5
2,236,815	-		MIT1002_02000	0.83	-2.1
2,236,836	+		MIT1002_02000	0.87	-0.2
2,236,867	+				+2.2
2,236,890	-				-0.4
2,236,913	+				+1.8
2,236,920	+				+0.1
2,236,921	-				-0.3
2,236,928	-				+0.5
2,236,928	-				-0.5
2,236,928	-				+1.6
2,236,928	-				+3.5
2,236,958	-				+0.3
2,237,008	+		MIT1002_02001	0.12	-1.0
2,237,049	+		MIT1002_02001	0.18	-0.5
2,237,064	-		MIT1002_02001	0.20	+0.8
2,237,078	-		MIT1002_02001	0.22	-0.3
2,237,111	-		MIT1002_02001	0.27	-1.8
2,237,235	-		MIT1002_02001	0.44	-3.3
2,237,250	+		MIT1002_02001	0.46	-2.7
2,237,258	-		MIT1002_02001	0.47	-0.7
2,237,264	-		MIT1002_02001	0.48	-2.0
2,237,348	-		MIT1002_02001	0.60	-0.2
2,237,350	+		MIT1002_02001	0.60	-1.0
2,237,415	+		MIT1002_02001	0.69	+0.0
2,237,483	+		MIT1002_02001	0.79	-0.0
2,237,491	-		MIT1002_02001	0.80	+1.6
2,237,540	+		MIT1002_02001	0.87	-0.0
2,237,548	-		MIT1002_02001	0.88	-1.3
2,237,592	-				+0.4
2,237,604	+				+1.1
2,237,808	-				+0.8
2,237,896	-		MIT1002_02002	0.16	+0.3
2,237,919	+		MIT1002_02002	0.19	-1.2
2,237,919	+		MIT1002_02002	0.19	-0.4
2,237,925	+		MIT1002_02002	0.19	-0.3
2,237,927	-		MIT1002_02002	0.20	-0.8
2,237,933	-		MIT1002_02002	0.20	+0.3
2,237,968	-		MIT1002_02002	0.24	+1.6
2,238,037	-		MIT1002_02002	0.32	-2.6
2,238,184	+		MIT1002_02002	0.49	-1.2
2,238,315	+		MIT1002_02002	0.64	-0.4
2,238,369	-		MIT1002_02002	0.70	-0.9
2,238,373	+		MIT1002_02002	0.70	+0.2
2,238,391	-		MIT1002_02002	0.72	-1.6
2,238,589	-				-2.1