Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01876

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
2,086,584	+				-1.2
2,086,647	-				+0.0
2,086,782	+		MIT1002_01875	0.31	-0.3
2,086,879	+		MIT1002_01875	0.52	+1.1
2,086,886	+		MIT1002_01875	0.54	-1.7
2,086,887	-		MIT1002_01875	0.54	-0.3
2,086,894	+		MIT1002_01875	0.56	-0.8
2,086,900	+		MIT1002_01875	0.57	-3.8
2,086,919	+		MIT1002_01875	0.61	-0.5
2,086,965	+		MIT1002_01875	0.71	-1.4
2,086,977	+		MIT1002_01875	0.74	-0.4
2,086,977	+		MIT1002_01875	0.74	-1.2
2,086,977	+		MIT1002_01875	0.74	-0.3
2,086,977	+		MIT1002_01875	0.74	-0.8
2,086,985	-		MIT1002_01875	0.76	+0.8
2,087,011	-		MIT1002_01875	0.81	+0.1
2,087,425	+				-0.4
2,087,433	-				+1.3
2,087,433	-				-0.0
2,087,433	-				-0.6
2,087,433	-				+1.2
2,087,435	+				-0.1
2,087,448	-				+0.3
2,087,470	+		MIT1002_01876	0.11	+0.2
2,087,470	+		MIT1002_01876	0.11	+1.3
2,087,478	-		MIT1002_01876	0.11	+0.8
2,087,497	+		MIT1002_01876	0.13	+0.1
2,087,562	+		MIT1002_01876	0.17	-1.2
2,087,716	+		MIT1002_01876	0.29	-0.1
2,087,716	+		MIT1002_01876	0.29	-1.3
2,087,716	+		MIT1002_01876	0.29	-0.1
2,087,724	-		MIT1002_01876	0.29	+1.3
2,087,724	-		MIT1002_01876	0.29	+2.2
2,087,724	-		MIT1002_01876	0.29	+0.9
2,087,726	+		MIT1002_01876	0.30	-0.0
2,087,726	+		MIT1002_01876	0.30	-2.2
2,087,781	+		MIT1002_01876	0.34	+1.6
2,087,809	+		MIT1002_01876	0.36	-1.0
2,087,834	-		MIT1002_01876	0.38	+0.4
2,087,834	-		MIT1002_01876	0.38	-1.7
2,087,943	+		MIT1002_01876	0.46	-0.8
2,087,972	+		MIT1002_01876	0.48	+0.0
2,088,001	+		MIT1002_01876	0.50	+0.8
2,088,228	+		MIT1002_01876	0.67	+0.4
2,088,228	+		MIT1002_01876	0.67	+0.1
2,088,302	-		MIT1002_01876	0.72	-0.7
2,088,304	+		MIT1002_01876	0.72	-0.1
2,088,307	+		MIT1002_01876	0.72	-1.8
2,088,360	+		MIT1002_01876	0.76	-0.5
2,088,434	+		MIT1002_01876	0.82	+3.3
2,088,442	-		MIT1002_01876	0.82	+1.6
2,088,447	-		MIT1002_01876	0.83	+1.0
2,088,504	+		MIT1002_01876	0.87	+0.8
2,088,712	-				+1.5
2,088,717	+				+0.4
2,088,725	-				+0.3
2,088,759	-				-1.8
2,088,797	-				+1.2
2,088,879	-		MIT1002_01877	0.12	+2.2
2,088,911	+		MIT1002_01877	0.14	+1.0
2,088,919	-		MIT1002_01877	0.14	+0.3
2,088,924	+		MIT1002_01877	0.14	-0.2
2,088,924	-		MIT1002_01877	0.14	-1.1
2,088,987	+		MIT1002_01877	0.18	+2.0
2,088,997	+		MIT1002_01877	0.19	-0.3
2,089,049	+		MIT1002_01877	0.22	-2.7
2,089,105	+		MIT1002_01877	0.26	-1.1
2,089,120	-		MIT1002_01877	0.27	-1.1
2,089,211	+		MIT1002_01877	0.32	-1.6
2,089,242	-		MIT1002_01877	0.34	+0.6
2,089,247	+		MIT1002_01877	0.34	-0.1
2,089,247	+		MIT1002_01877	0.34	-0.4
2,089,255	-		MIT1002_01877	0.35	+0.5
2,089,294	-		MIT1002_01877	0.37	+0.8
2,089,314	+		MIT1002_01877	0.38	+1.5
2,089,373	-		MIT1002_01877	0.42	+2.5
2,089,590	+		MIT1002_01877	0.55	-1.4
2,089,590	+		MIT1002_01877	0.55	-1.5
2,089,625	+		MIT1002_01877	0.58	+0.6
2,089,633	-		MIT1002_01877	0.58	-1.4
2,089,633	-		MIT1002_01877	0.58	-1.2
2,089,665	+		MIT1002_01877	0.60	-0.5
2,089,668	-		MIT1002_01877	0.60	+0.1