Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01794

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
1,996,692	+		MIT1002_01793	0.69	-0.8
1,996,706	+		MIT1002_01793	0.70	-0.8
1,996,714	-		MIT1002_01793	0.70	+0.9
1,996,714	-		MIT1002_01793	0.70	+0.7
1,996,748	+		MIT1002_01793	0.72	-0.4
1,996,782	+		MIT1002_01793	0.73	+1.2
1,996,790	-		MIT1002_01793	0.73	-1.7
1,996,871	+		MIT1002_01793	0.77	+0.4
1,996,871	+		MIT1002_01793	0.77	+2.1
1,996,871	+		MIT1002_01793	0.77	-2.0
1,996,871	+		MIT1002_01793	0.77	+0.4
1,996,871	+		MIT1002_01793	0.77	+0.0
1,996,871	+		MIT1002_01793	0.77	+0.5
1,996,871	+		MIT1002_01793	0.77	+0.3
1,996,871	+		MIT1002_01793	0.77	+0.7
1,996,871	+		MIT1002_01793	0.77	+1.3
1,996,871	+		MIT1002_01793	0.77	+0.6
1,996,871	+		MIT1002_01793	0.77	+1.3
1,996,871	+		MIT1002_01793	0.77	-2.9
1,996,874	-		MIT1002_01793	0.77	+0.4
1,996,879	-		MIT1002_01793	0.77	-0.3
1,996,879	-		MIT1002_01793	0.77	-0.5
1,996,879	-		MIT1002_01793	0.77	+0.8
1,996,879	-		MIT1002_01793	0.77	-0.1
1,996,879	-		MIT1002_01793	0.77	+1.2
1,996,879	-		MIT1002_01793	0.77	+0.1
1,996,879	-		MIT1002_01793	0.77	-1.4
1,996,879	-		MIT1002_01793	0.77	-1.0
1,996,954	-		MIT1002_01793	0.80	-0.7
1,996,960	+		MIT1002_01793	0.81	-0.3
1,996,960	+		MIT1002_01793	0.81	+2.2
1,996,960	+		MIT1002_01793	0.81	-0.1
1,996,968	-		MIT1002_01793	0.81	-0.4
1,996,968	-		MIT1002_01793	0.81	+1.1
1,996,968	-		MIT1002_01793	0.81	+2.2
1,996,968	-		MIT1002_01793	0.81	-0.6
1,996,968	-		MIT1002_01793	0.81	+3.0
1,996,978	-		MIT1002_01793	0.81	+1.8
1,996,992	+		MIT1002_01793	0.82	-1.1
1,997,015	-		MIT1002_01793	0.83	-2.7
1,997,074	+		MIT1002_01793	0.85	-0.8
1,997,082	-		MIT1002_01793	0.86	-0.6
1,997,141	+		MIT1002_01793	0.88	-0.1
1,997,171	-		MIT1002_01793	0.90	-0.1
1,997,171	-		MIT1002_01793	0.90	-0.3
1,997,226	-				-0.2
1,997,257	-				+1.5
1,997,297	+				+0.7
1,997,326	-				+1.0
1,997,344	+				+1.2
1,997,345	+				-0.6
1,997,353	-				+0.8
1,997,423	+				-0.4
1,997,475	-				+0.1
1,997,494	+				-0.8
1,997,494	+				+0.0
1,997,494	+				+0.3
1,997,502	-				+0.6
1,997,510	+				+0.0
1,997,511	+				+0.8
1,997,512	-				+0.5
1,997,519	-				+1.5
1,997,519	-				-1.3
1,997,648	-				+0.2
1,997,743	-		MIT1002_01794	0.16	-0.4
1,997,796	+		MIT1002_01794	0.27	+0.8
1,997,816	+		MIT1002_01794	0.32	+0.4
1,997,824	-		MIT1002_01794	0.33	-0.6
1,997,870	+		MIT1002_01794	0.43	-0.5
1,997,902	+		MIT1002_01794	0.50	+2.0
1,997,902	+		MIT1002_01794	0.50	-0.5
1,997,902	+		MIT1002_01794	0.50	-0.9
1,997,902	+		MIT1002_01794	0.50	-1.5
1,997,910	-		MIT1002_01794	0.52	+0.1
1,997,910	-		MIT1002_01794	0.52	+0.6
1,997,910	-		MIT1002_01794	0.52	-2.9
1,997,910	-		MIT1002_01794	0.52	-1.2
1,997,944	+		MIT1002_01794	0.59	-1.3
1,997,952	-		MIT1002_01794	0.61	+0.2
1,998,033	+		MIT1002_01794	0.78	-0.6
1,998,063	+		MIT1002_01794	0.85	+0.8
1,998,084	+		MIT1002_01794	0.89	+0.3
1,998,106	+				-0.9
1,998,117	-				-0.6
1,998,117	-				+1.0
1,998,206	+				+0.0
1,998,280	-				+0.2
1,998,338	+				-0.1
1,998,338	+				+0.4
1,998,338	+				+1.1
1,998,338	+				-3.3
1,998,338	+				-1.4
1,998,346	-				-0.3
1,998,347	+				+2.1
1,998,502	-				-0.9
1,998,516	+				+0.1
1,998,524	-				+0.0
1,998,546	+				-1.1
1,998,554	-				+0.6
1,998,559	-				-1.2
1,998,813	-		MIT1002_01795	0.16	-1.5
1,998,813	-		MIT1002_01795	0.16	-1.0
1,998,819	-		MIT1002_01795	0.17	-0.4
1,998,832	-		MIT1002_01795	0.19	+0.9
1,998,888	-		MIT1002_01795	0.26	-1.5
1,998,895	-		MIT1002_01795	0.27	-1.2
1,998,949	-		MIT1002_01795	0.34	-0.7
1,998,960	-		MIT1002_01795	0.36	+1.0
1,998,989	-		MIT1002_01795	0.40	-0.2
1,999,018	-		MIT1002_01795	0.44	+0.8
1,999,118	-		MIT1002_01795	0.57	-2.1