Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01746

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
1,939,326	+		MIT1002_01744	0.90	-0.8
1,939,328	+		MIT1002_01744	0.90	+0.3
1,939,328	+		MIT1002_01744	0.90	-1.2
1,939,394	-				-2.5
1,939,394	-				-0.8
1,939,423	-				+0.3
1,939,438	+				+0.2
1,939,446	-				-0.8
1,939,446	-				-1.3
1,939,446	-				-0.1
1,939,446	-				+1.0
1,939,465	-				-0.4
1,939,492	+				-1.5
1,939,569	+				+1.4
1,939,579	+				-0.3
1,939,579	+				+0.6
1,939,579	+				-0.4
1,939,579	+				+1.0
1,939,579	+				-0.5
1,939,579	+				-0.2
1,939,579	+				+0.0
1,939,579	+				-1.8
1,939,587	-				+0.6
1,939,587	-				+0.3
1,939,587	-				-1.0
1,939,587	-				-0.5
1,939,587	-				-0.4
1,939,587	-				+0.5
1,939,587	-				+0.3
1,939,587	-				+1.2
1,939,587	-				+0.6
1,939,587	-				+0.3
1,939,650	+				-2.8
1,939,673	+				+0.1
1,939,679	-				+0.8
1,939,729	+				-3.0
1,939,742	-				+0.8
1,939,742	-				-1.8
1,939,826	-		MIT1002_01745	0.23	-1.1
1,939,835	-		MIT1002_01745	0.25	+0.2
1,939,866	+		MIT1002_01745	0.33	-1.4
1,939,869	+		MIT1002_01745	0.34	-0.8
1,939,871	+		MIT1002_01745	0.35	+0.6
1,939,889	+		MIT1002_01745	0.39	-2.3
1,939,907	+		MIT1002_01745	0.44	+0.8
1,939,907	+		MIT1002_01745	0.44	-1.8
1,939,907	+		MIT1002_01745	0.44	+0.2
1,939,907	+		MIT1002_01745	0.44	+0.4
1,939,907	+		MIT1002_01745	0.44	-0.5
1,939,945	-		MIT1002_01745	0.54	+0.3
1,939,975	+		MIT1002_01745	0.62	-0.5
1,940,010	+		MIT1002_01745	0.71	-0.2
1,940,020	+		MIT1002_01745	0.74	+2.2
1,940,065	-		MIT1002_01745	0.86	+0.5
1,940,071	+		MIT1002_01745	0.87	-1.7
1,940,101	+				-0.3
1,940,109	-				-2.6
1,940,158	+				-0.3
1,940,161	-				-0.5
1,940,161	-				-0.4
1,940,166	-				+0.9
1,940,185	-		MIT1002_01746	0.15	-1.4
1,940,255	+		MIT1002_01746	0.34	-1.6
1,940,290	-		MIT1002_01746	0.43	-0.3
1,940,300	-		MIT1002_01746	0.46	+0.8
1,940,331	+		MIT1002_01746	0.55	-1.0
1,940,339	-		MIT1002_01746	0.57	-0.5
1,940,339	-		MIT1002_01746	0.57	-0.5
1,940,385	-		MIT1002_01746	0.69	+0.7
1,940,450	-		MIT1002_01746	0.87	-1.5
1,940,460	+				-0.7
1,940,590	-				-0.8
1,940,636	+				+0.4
1,940,655	+				-0.2
1,940,676	+				+1.8
1,940,813	-				+1.3
1,940,813	-				+1.5
1,940,818	-				+0.2
1,940,820	+				-0.2
1,940,823	-				+1.9
1,940,855	+				-1.2
1,940,926	-				+1.0
1,941,014	+		MIT1002_01747	0.22	+0.6
1,941,035	+		MIT1002_01747	0.30	-1.3
1,941,040	+		MIT1002_01747	0.32	+2.1
1,941,040	+		MIT1002_01747	0.32	+0.9
1,941,043	-		MIT1002_01747	0.33	-0.8
1,941,055	-		MIT1002_01747	0.37	-0.1
1,941,057	+		MIT1002_01747	0.38	-0.7
1,941,075	+		MIT1002_01747	0.45	+0.9
1,941,075	+		MIT1002_01747	0.45	-0.2
1,941,083	-		MIT1002_01747	0.47	-0.1
1,941,083	-		MIT1002_01747	0.47	-1.8
1,941,154	+		MIT1002_01747	0.73	+1.0
1,941,162	-		MIT1002_01747	0.76	-1.0
1,941,186	-		MIT1002_01747	0.85	-0.6
1,941,480	-				+0.4
1,941,480	-				+1.0
1,941,482	-				-0.1