Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01602 and MIT1002_01603 are separated by 447 nucleotides MIT1002_01603 and MIT1002_01604 are separated by 216 nucleotides MIT1002_01604 and MIT1002_01605 are separated by 118 nucleotides MIT1002_01605 and MIT1002_01606 are separated by 18 nucleotides
MIT1002_01602: MIT1002_01602 - Fructosamine-3-kinase, at 1,765,155 to 1,766,039
_01602
MIT1002_01603: MIT1002_01603 - Threonine--tRNA ligase, at 1,766,487 to 1,768,403
_01603
MIT1002_01604: MIT1002_01604 - Translation initiation factor IF-3, at 1,768,620 to 1,769,054
_01604
MIT1002_01605: MIT1002_01605 - Ribosomal protein A, at 1,769,173 to 1,769,370
_01605
MIT1002_01606: MIT1002_01606 - 50S ribosomal protein L20, at 1,769,389 to 1,769,745
_01606
Position (kb)
1766
1767
1768
1769 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1765.602 kb on - strand, within MIT1002_01602 at 1765.655 kb on + strand, within MIT1002_01602 at 1765.666 kb on + strand, within MIT1002_01602 at 1765.671 kb on + strand, within MIT1002_01602 at 1765.671 kb on + strand, within MIT1002_01602 at 1765.679 kb on - strand, within MIT1002_01602 at 1765.825 kb on - strand, within MIT1002_01602 at 1765.941 kb on + strand, within MIT1002_01602 at 1765.975 kb on + strand at 1766.086 kb on + strand at 1766.112 kb on + strand at 1766.112 kb on + strand at 1766.114 kb on + strand at 1766.120 kb on - strand at 1766.120 kb on - strand at 1766.120 kb on - strand at 1766.154 kb on - strand at 1766.222 kb on + strand at 1766.245 kb on + strand at 1766.301 kb on + strand at 1766.376 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 1,765,602 - MIT1002_01602 0.51 +1.5 1,765,655 + MIT1002_01602 0.56 +1.5 1,765,666 + MIT1002_01602 0.58 -0.3 1,765,671 + MIT1002_01602 0.58 +2.9 1,765,671 + MIT1002_01602 0.58 +1.1 1,765,679 - MIT1002_01602 0.59 -0.9 1,765,825 - MIT1002_01602 0.76 +2.0 1,765,941 + MIT1002_01602 0.89 +0.1 1,765,975 + -0.5 1,766,086 + +0.9 1,766,112 + -1.2 1,766,112 + +0.5 1,766,114 + -1.1 1,766,120 - +1.9 1,766,120 - -1.6 1,766,120 - -1.2 1,766,154 - -0.2 1,766,222 + -0.0 1,766,245 + +0.4 1,766,301 + -0.1 1,766,376 + -0.8
Or see this region's nucleotide sequence