Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01521

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
1,670,013	+				+0.4
1,670,014	+				-1.0
1,670,184	+		MIT1002_01520	0.20	-1.3
1,670,200	+		MIT1002_01520	0.22	-1.4
1,670,274	+		MIT1002_01520	0.30	-0.0
1,670,312	+		MIT1002_01520	0.34	+0.3
1,670,335	-		MIT1002_01520	0.37	-1.1
1,670,335	-		MIT1002_01520	0.37	-0.3
1,670,349	+		MIT1002_01520	0.38	-0.6
1,670,382	+		MIT1002_01520	0.42	+0.3
1,670,382	+		MIT1002_01520	0.42	+0.1
1,670,382	+		MIT1002_01520	0.42	+0.1
1,670,382	+		MIT1002_01520	0.42	+1.1
1,670,382	+		MIT1002_01520	0.42	+1.9
1,670,382	+		MIT1002_01520	0.42	-0.0
1,670,532	+		MIT1002_01520	0.58	-0.5
1,670,593	-		MIT1002_01520	0.65	-0.8
1,670,626	+		MIT1002_01520	0.69	-0.3
1,670,626	+		MIT1002_01520	0.69	+0.2
1,670,634	-		MIT1002_01520	0.70	-0.6
1,670,670	+		MIT1002_01520	0.74	+1.5
1,670,718	+		MIT1002_01520	0.79	+1.0
1,670,718	+		MIT1002_01520	0.79	-0.9
1,670,718	+		MIT1002_01520	0.79	-1.6
1,670,726	-		MIT1002_01520	0.80	+0.5
1,670,726	-		MIT1002_01520	0.80	+0.1
1,670,772	-		MIT1002_01520	0.85	-0.1
1,670,829	+				-0.2
1,670,846	-				+0.3
1,670,885	-				-0.5
1,670,887	+				+0.3
1,670,895	-				-2.0
1,670,920	+				-0.8
1,670,936	-				-0.1
1,670,959	+				+4.2
1,670,975	+				-0.6
1,670,977	-				+0.1
1,671,040	-		MIT1002_01521	0.19	+0.1
1,671,113	-		MIT1002_01521	0.29	-0.2
1,671,124	+		MIT1002_01521	0.31	-0.1
1,671,124	+		MIT1002_01521	0.31	-1.5
1,671,124	+		MIT1002_01521	0.31	-1.7
1,671,221	+		MIT1002_01521	0.45	-0.4
1,671,229	-		MIT1002_01521	0.46	+1.5
1,671,275	+		MIT1002_01521	0.53	+0.3
1,671,275	+		MIT1002_01521	0.53	-0.1
1,671,310	-		MIT1002_01521	0.58	-1.1
1,671,310	-		MIT1002_01521	0.58	-1.4
1,671,377	+		MIT1002_01521	0.68	-1.2
1,671,417	-		MIT1002_01521	0.73	+0.8
1,671,426	+		MIT1002_01521	0.75	-0.5
1,671,466	+		MIT1002_01521	0.80	-1.4
1,671,474	-		MIT1002_01521	0.82	+0.3
1,671,480	+		MIT1002_01521	0.82	-1.8
1,671,501	+		MIT1002_01521	0.85	+0.2
1,671,501	+		MIT1002_01521	0.85	-0.8
1,671,501	+		MIT1002_01521	0.85	+0.6
1,671,509	-		MIT1002_01521	0.87	+0.3
1,671,509	-		MIT1002_01521	0.87	-0.8
1,671,509	-		MIT1002_01521	0.87	+1.7
1,671,544	-				+1.6
1,671,557	+				-0.1
1,671,668	+				+0.7
1,671,670	+				+0.5
1,671,761	-		MIT1002_01522	0.26	-1.7
1,671,763	+		MIT1002_01522	0.27	-0.0
1,671,823	-		MIT1002_01522	0.40	+0.3
1,671,855	-		MIT1002_01522	0.47	+0.1
1,671,904	+		MIT1002_01522	0.57	+2.3
1,671,912	-		MIT1002_01522	0.59	-1.0
1,672,031	+		MIT1002_01522	0.84	+0.0
1,672,031	-		MIT1002_01522	0.84	-0.7
1,672,036	+		MIT1002_01522	0.85	-1.0
1,672,073	-				+0.4
1,672,073	-				-1.2
1,672,083	+				-0.6
1,672,165	-				+0.3
1,672,175	+				-0.1
1,672,176	+				-0.0
1,672,189	-				+0.5
1,672,189	-				+3.0
1,672,197	+				+1.1
1,672,221	+		MIT1002_01523	0.11	-0.2
1,672,266	+		MIT1002_01523	0.15	+0.8
1,672,274	-		MIT1002_01523	0.16	+0.1
1,672,283	+		MIT1002_01523	0.17	-1.1
1,672,301	-		MIT1002_01523	0.19	-1.0
1,672,351	+		MIT1002_01523	0.23	+0.2
1,672,351	+		MIT1002_01523	0.23	+1.0
1,672,356	+		MIT1002_01523	0.24	+0.9
1,672,356	+		MIT1002_01523	0.24	-2.9
1,672,356	+		MIT1002_01523	0.24	-0.1
1,672,356	+		MIT1002_01523	0.24	+0.5
1,672,356	+		MIT1002_01523	0.24	-1.8
1,672,356	+		MIT1002_01523	0.24	-1.1
1,672,356	+		MIT1002_01523	0.24	-0.9
1,672,356	+		MIT1002_01523	0.24	+0.3
1,672,356	+		MIT1002_01523	0.24	-0.2
1,672,356	+		MIT1002_01523	0.24	+3.2
1,672,356	+		MIT1002_01523	0.24	+1.0
1,672,356	+		MIT1002_01523	0.24	+0.3
1,672,356	+		MIT1002_01523	0.24	-1.4
1,672,356	+		MIT1002_01523	0.24	+1.5
1,672,356	+		MIT1002_01523	0.24	+0.4
1,672,356	+		MIT1002_01523	0.24	-1.9
1,672,356	+		MIT1002_01523	0.24	+0.0
1,672,356	+		MIT1002_01523	0.24	-0.6
1,672,356	+		MIT1002_01523	0.24	-0.7
1,672,356	+		MIT1002_01523	0.24	-0.2
1,672,364	-		MIT1002_01523	0.24	+0.1
1,672,364	-		MIT1002_01523	0.24	-1.3
1,672,364	-		MIT1002_01523	0.24	+1.3
1,672,364	-		MIT1002_01523	0.24	+0.6
1,672,364	-		MIT1002_01523	0.24	+0.9
1,672,364	-		MIT1002_01523	0.24	-1.5
1,672,364	-		MIT1002_01523	0.24	-0.0
1,672,364	-		MIT1002_01523	0.24	-0.8
1,672,385	-		MIT1002_01523	0.26	-1.2
1,672,437	+		MIT1002_01523	0.31	+0.3
1,672,445	-		MIT1002_01523	0.32	+0.5
1,672,448	+		MIT1002_01523	0.32	-0.5
1,672,448	+		MIT1002_01523	0.32	+0.3
1,672,456	-		MIT1002_01523	0.33	+0.2
1,672,476	+		MIT1002_01523	0.35	-1.7
1,672,484	+		MIT1002_01523	0.35	+1.2
1,672,501	-		MIT1002_01523	0.37	+0.3