Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01462

Experiment: monoculture; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 5
1,613,204	-		MIT1002_01461	0.47	-0.4
1,613,220	-		MIT1002_01461	0.48	+2.3
1,613,236	+		MIT1002_01461	0.49	-0.1
1,613,328	+		MIT1002_01461	0.57	-1.0
1,613,336	-		MIT1002_01461	0.57	+1.5
1,613,370	-		MIT1002_01461	0.60	-0.7
1,613,529	+		MIT1002_01461	0.73	+1.2
1,613,531	+		MIT1002_01461	0.73	+1.4
1,613,539	-		MIT1002_01461	0.73	-2.5
1,613,539	-		MIT1002_01461	0.73	+0.1
1,613,541	+		MIT1002_01461	0.74	+0.1
1,613,541	+		MIT1002_01461	0.74	+0.2
1,613,541	-		MIT1002_01461	0.74	-0.6
1,613,549	-		MIT1002_01461	0.74	-1.3
1,613,549	-		MIT1002_01461	0.74	+0.9
1,613,551	+		MIT1002_01461	0.74	-1.1
1,613,559	-		MIT1002_01461	0.75	+1.0
1,613,564	-		MIT1002_01461	0.75	-0.5
1,613,684	+		MIT1002_01461	0.85	-1.6
1,613,769	+				+0.3
1,613,803	+				-0.7
1,613,808	+				+1.1
1,613,808	+				-1.1
1,613,811	-				-0.8
1,613,818	-				+2.0
1,613,818	-				-0.5
1,613,825	+				+0.6
1,613,895	-				-0.1
1,613,895	-				+1.9
1,613,966	-				+1.4
1,614,141	-				+0.0
1,614,183	+				+0.6
1,614,183	+				+1.1
1,614,286	-				+0.2
1,614,375	-				+0.6
1,614,387	+				+0.2
1,614,419	-				-1.7
1,614,421	+				+0.5
1,614,421	+				-0.7
1,614,421	+				+0.1
1,614,429	-				+1.1
1,614,429	-				-0.1
1,614,489	-		MIT1002_01462	0.12	-0.1
1,614,555	+		MIT1002_01462	0.14	+0.5
1,614,555	+		MIT1002_01462	0.14	+1.1
1,614,555	+		MIT1002_01462	0.14	+1.6
1,614,555	+		MIT1002_01462	0.14	-0.6
1,614,556	-		MIT1002_01462	0.15	+0.4
1,614,563	-		MIT1002_01462	0.15	+0.5
1,614,563	-		MIT1002_01462	0.15	-0.6
1,614,570	-		MIT1002_01462	0.15	-0.7
1,614,575	-		MIT1002_01462	0.15	+1.6
1,614,671	-		MIT1002_01462	0.19	-0.5
1,614,732	+		MIT1002_01462	0.21	-0.8
1,614,736	+		MIT1002_01462	0.21	+0.5
1,614,736	+		MIT1002_01462	0.21	+0.6
1,614,779	-		MIT1002_01462	0.23	+0.8
1,614,849	-		MIT1002_01462	0.26	-0.1
1,614,849	-		MIT1002_01462	0.26	+1.3
1,614,876	+		MIT1002_01462	0.27	+0.3
1,614,931	+		MIT1002_01462	0.29	+0.4
1,615,008	+		MIT1002_01462	0.32	+1.8
1,615,008	+		MIT1002_01462	0.32	+1.9
1,615,008	+		MIT1002_01462	0.32	+0.6
1,615,011	-		MIT1002_01462	0.32	+1.0
1,615,016	-		MIT1002_01462	0.32	+1.3
1,615,016	-		MIT1002_01462	0.32	+0.3
1,615,016	-		MIT1002_01462	0.32	+0.8
1,615,023	+		MIT1002_01462	0.33	+0.5
1,615,060	-		MIT1002_01462	0.34	+0.1
1,615,109	-		MIT1002_01462	0.36	+1.0
1,615,111	-		MIT1002_01462	0.36	-0.3
1,615,116	-		MIT1002_01462	0.36	-0.1
1,615,131	-		MIT1002_01462	0.37	-0.1
1,615,158	+		MIT1002_01462	0.38	+0.4
1,615,158	+		MIT1002_01462	0.38	+0.3
1,615,158	+		MIT1002_01462	0.38	+0.4
1,615,165	+		MIT1002_01462	0.38	+1.0
1,615,166	-		MIT1002_01462	0.38	-0.1
1,615,357	+		MIT1002_01462	0.45	+0.2
1,615,365	-		MIT1002_01462	0.46	-0.7
1,615,370	-		MIT1002_01462	0.46	-0.1
1,615,467	+		MIT1002_01462	0.50	+0.5
1,615,467	+		MIT1002_01462	0.50	-0.4
1,615,567	+		MIT1002_01462	0.54	+0.1
1,615,611	-		MIT1002_01462	0.55	+1.1
1,615,758	+		MIT1002_01462	0.61	+0.5
1,615,763	+		MIT1002_01462	0.61	-1.0
1,615,763	+		MIT1002_01462	0.61	-0.1
1,615,773	+		MIT1002_01462	0.62	-0.3
1,615,806	+		MIT1002_01462	0.63	+0.3
1,615,811	+		MIT1002_01462	0.63	+1.4
1,615,831	-		MIT1002_01462	0.64	+2.3
1,615,920	-		MIT1002_01462	0.67	-2.3
1,616,025	+		MIT1002_01462	0.71	-0.7
1,616,066	-		MIT1002_01462	0.73	+1.8
1,616,089	+		MIT1002_01462	0.74	-1.0
1,616,107	+		MIT1002_01462	0.74	+1.1
1,616,121	+		MIT1002_01462	0.75	+0.6
1,616,131	+		MIT1002_01462	0.75	-0.7
1,616,139	-		MIT1002_01462	0.76	+0.7
1,616,211	-		MIT1002_01462	0.78	+2.1
1,616,235	-		MIT1002_01462	0.79	+1.3
1,616,265	+		MIT1002_01462	0.81	+0.7
1,616,275	+		MIT1002_01462	0.81	-0.3
1,616,278	-		MIT1002_01462	0.81	+0.2
1,616,369	+		MIT1002_01462	0.85	+0.2
1,616,394	-		MIT1002_01462	0.86	+1.7
1,616,438	-		MIT1002_01462	0.87	+0.2
1,616,602	-				+0.5
1,616,671	-				+0.6
1,616,689	-				+0.2
1,616,713	+				+1.4
1,616,716	-				+1.3
1,616,721	-				+1.6
1,616,776	-				-0.5
1,616,778	+				-0.9
1,616,786	-				-0.1
1,616,887	+				-2.4
1,616,920	+				-0.6
1,616,933	+				+0.3
1,616,943	+				+3.3
1,616,946	-				+0.6
1,616,951	-				-1.2
1,616,988	+				+0.5
1,616,996	-				-0.1
1,616,996	-				-0.5
1,617,092	+				+0.4
1,617,092	+				+0.1
1,617,092	+				-0.5
1,617,092	+				+1.6
1,617,092	+				-0.9
1,617,099	-				-1.6
1,617,100	-				+1.3
1,617,100	-				+0.3
1,617,100	-				-1.5
1,617,100	-				+0.3
1,617,100	-				-1.1
1,617,100	-				-0.3
1,617,100	-				+0.6
1,617,115	-				-0.6
1,617,121	+				+1.1
1,617,225	+		MIT1002_01463	0.14	-1.5
1,617,279	+		MIT1002_01463	0.17	+2.0
1,617,350	+		MIT1002_01463	0.21	+0.4
1,617,365	-		MIT1002_01463	0.21	-1.8
1,617,375	-		MIT1002_01463	0.22	-0.0
1,617,444	+		MIT1002_01463	0.26	+1.2
1,617,533	-		MIT1002_01463	0.30	+0.3
1,617,563	-		MIT1002_01463	0.32	+3.1
1,617,740	-		MIT1002_01463	0.41	-1.4