Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00745

Experiment: monoculture; Experiment A, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00743 and MIT1002_00744 are separated by 176 nucleotidesMIT1002_00744 and MIT1002_00745 are separated by 82 nucleotidesMIT1002_00745 and MIT1002_00746 are separated by 449 nucleotides MIT1002_00743: MIT1002_00743 - Undecaprenyl-diphosphatase, at 814,427 to 815,227 _00743 MIT1002_00744: MIT1002_00744 - HIT-like protein, at 815,404 to 815,775 _00744 MIT1002_00745: MIT1002_00745 - Peptidase family M49, at 815,858 to 817,552 _00745 MIT1002_00746: MIT1002_00746 - HDOD domain protein, at 818,002 to 818,838 _00746 Position (kb) 815 816 817 818Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 815.209 kb on - strandat 815.273 kb on + strandat 815.314 kb on - strandat 815.465 kb on + strand, within MIT1002_00744at 815.491 kb on + strand, within MIT1002_00744at 815.513 kb on - strand, within MIT1002_00744at 815.623 kb on + strand, within MIT1002_00744at 815.623 kb on + strand, within MIT1002_00744at 815.623 kb on + strand, within MIT1002_00744at 815.623 kb on + strand, within MIT1002_00744at 815.631 kb on - strand, within MIT1002_00744at 815.631 kb on - strand, within MIT1002_00744at 815.646 kb on - strand, within MIT1002_00744at 815.656 kb on + strand, within MIT1002_00744at 815.664 kb on - strand, within MIT1002_00744at 815.664 kb on - strand, within MIT1002_00744at 815.733 kb on - strand, within MIT1002_00744at 815.743 kb on - strandat 815.765 kb on + strandat 815.765 kb on + strandat 815.845 kb on + strandat 815.853 kb on - strandat 815.853 kb on - strandat 815.858 kb on - strandat 815.922 kb on + strandat 815.922 kb on + strandat 815.930 kb on - strandat 815.973 kb on - strandat 816.030 kb on + strand, within MIT1002_00745at 816.034 kb on - strand, within MIT1002_00745at 816.147 kb on + strand, within MIT1002_00745at 816.178 kb on + strand, within MIT1002_00745at 816.191 kb on - strand, within MIT1002_00745at 816.199 kb on + strand, within MIT1002_00745at 816.260 kb on + strand, within MIT1002_00745at 816.268 kb on - strand, within MIT1002_00745at 816.268 kb on - strand, within MIT1002_00745at 816.268 kb on - strand, within MIT1002_00745at 816.309 kb on - strand, within MIT1002_00745at 816.328 kb on - strand, within MIT1002_00745at 816.342 kb on + strand, within MIT1002_00745at 816.351 kb on - strand, within MIT1002_00745at 816.352 kb on - strand, within MIT1002_00745at 816.361 kb on - strand, within MIT1002_00745at 816.555 kb on + strand, within MIT1002_00745at 816.573 kb on - strand, within MIT1002_00745at 816.587 kb on + strand, within MIT1002_00745at 816.591 kb on + strand, within MIT1002_00745at 816.597 kb on - strand, within MIT1002_00745at 816.599 kb on - strand, within MIT1002_00745at 816.599 kb on - strand, within MIT1002_00745at 816.627 kb on + strand, within MIT1002_00745at 816.627 kb on + strand, within MIT1002_00745at 816.627 kb on + strand, within MIT1002_00745at 816.635 kb on - strand, within MIT1002_00745at 816.635 kb on - strand, within MIT1002_00745at 816.640 kb on + strand, within MIT1002_00745at 816.687 kb on - strand, within MIT1002_00745at 816.702 kb on + strand, within MIT1002_00745at 816.799 kb on - strand, within MIT1002_00745at 816.806 kb on + strand, within MIT1002_00745at 816.829 kb on + strand, within MIT1002_00745at 816.829 kb on + strand, within MIT1002_00745at 816.829 kb on + strand, within MIT1002_00745at 816.922 kb on + strand, within MIT1002_00745at 816.922 kb on + strand, within MIT1002_00745at 816.967 kb on + strand, within MIT1002_00745at 816.975 kb on - strand, within MIT1002_00745at 817.025 kb on - strand, within MIT1002_00745at 817.060 kb on + strand, within MIT1002_00745at 817.061 kb on + strand, within MIT1002_00745at 817.124 kb on - strand, within MIT1002_00745at 817.207 kb on - strand, within MIT1002_00745at 817.351 kb on + strand, within MIT1002_00745at 817.352 kb on - strand, within MIT1002_00745at 817.372 kb on + strand, within MIT1002_00745at 817.372 kb on + strand, within MIT1002_00745at 817.442 kb on - strandat 817.467 kb on - strandat 817.504 kb on - strandat 817.584 kb on + strandat 817.723 kb on + strandat 817.746 kb on + strandat 817.746 kb on + strandat 817.775 kb on + strandat 817.799 kb on - strandat 817.850 kb on + strandat 817.850 kb on + strandat 817.850 kb on + strandat 817.850 kb on + strandat 817.858 kb on - strandat 817.870 kb on - strandat 817.976 kb on + strandat 817.984 kb on - strandat 817.994 kb on - strandat 818.011 kb on - strandat 818.011 kb on - strandat 818.061 kb on + strandat 818.087 kb on + strand, within MIT1002_00746at 818.105 kb on + strand, within MIT1002_00746at 818.160 kb on - strand, within MIT1002_00746at 818.206 kb on - strand, within MIT1002_00746at 818.376 kb on + strand, within MIT1002_00746at 818.382 kb on + strand, within MIT1002_00746at 818.382 kb on + strand, within MIT1002_00746at 818.392 kb on + strand, within MIT1002_00746at 818.400 kb on + strand, within MIT1002_00746at 818.400 kb on + strand, within MIT1002_00746at 818.400 kb on + strand, within MIT1002_00746at 818.400 kb on + strand, within MIT1002_00746at 818.408 kb on - strand, within MIT1002_00746at 818.408 kb on - strand, within MIT1002_00746at 818.472 kb on + strand, within MIT1002_00746at 818.479 kb on - strand, within MIT1002_00746at 818.510 kb on + strand, within MIT1002_00746at 818.510 kb on + strand, within MIT1002_00746at 818.520 kb on - strand, within MIT1002_00746at 818.529 kb on + strand, within MIT1002_00746

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
remove
815,209 - -0.7
815,273 + +2.2
815,314 - -0.0
815,465 + MIT1002_00744 0.16 -0.7
815,491 + MIT1002_00744 0.23 -0.5
815,513 - MIT1002_00744 0.29 +0.4
815,623 + MIT1002_00744 0.59 +3.2
815,623 + MIT1002_00744 0.59 -1.1
815,623 + MIT1002_00744 0.59 -1.0
815,623 + MIT1002_00744 0.59 -0.6
815,631 - MIT1002_00744 0.61 -0.8
815,631 - MIT1002_00744 0.61 -1.2
815,646 - MIT1002_00744 0.65 -0.3
815,656 + MIT1002_00744 0.68 -1.7
815,664 - MIT1002_00744 0.70 -1.0
815,664 - MIT1002_00744 0.70 +0.4
815,733 - MIT1002_00744 0.88 -0.7
815,743 - +1.4
815,765 + -0.4
815,765 + -1.3
815,845 + +1.1
815,853 - -0.1
815,853 - +1.2
815,858 - -2.1
815,922 + +0.8
815,922 + -1.7
815,930 - +0.1
815,973 - -0.9
816,030 + MIT1002_00745 0.10 -0.2
816,034 - MIT1002_00745 0.10 -0.8
816,147 + MIT1002_00745 0.17 -0.1
816,178 + MIT1002_00745 0.19 +2.6
816,191 - MIT1002_00745 0.20 -0.2
816,199 + MIT1002_00745 0.20 +0.1
816,260 + MIT1002_00745 0.24 -0.2
816,268 - MIT1002_00745 0.24 +1.1
816,268 - MIT1002_00745 0.24 +0.9
816,268 - MIT1002_00745 0.24 -0.5
816,309 - MIT1002_00745 0.27 +0.0
816,328 - MIT1002_00745 0.28 +0.6
816,342 + MIT1002_00745 0.29 -0.2
816,351 - MIT1002_00745 0.29 +0.1
816,352 - MIT1002_00745 0.29 -0.6
816,361 - MIT1002_00745 0.30 +1.2
816,555 + MIT1002_00745 0.41 -1.5
816,573 - MIT1002_00745 0.42 +0.8
816,587 + MIT1002_00745 0.43 -3.4
816,591 + MIT1002_00745 0.43 +0.5
816,597 - MIT1002_00745 0.44 -2.5
816,599 - MIT1002_00745 0.44 +1.3
816,599 - MIT1002_00745 0.44 +2.2
816,627 + MIT1002_00745 0.45 +1.3
816,627 + MIT1002_00745 0.45 +0.4
816,627 + MIT1002_00745 0.45 +0.9
816,635 - MIT1002_00745 0.46 +2.2
816,635 - MIT1002_00745 0.46 -1.7
816,640 + MIT1002_00745 0.46 +0.4
816,687 - MIT1002_00745 0.49 +0.1
816,702 + MIT1002_00745 0.50 +0.9
816,799 - MIT1002_00745 0.56 -0.7
816,806 + MIT1002_00745 0.56 -0.6
816,829 + MIT1002_00745 0.57 -0.1
816,829 + MIT1002_00745 0.57 -1.5
816,829 + MIT1002_00745 0.57 +0.8
816,922 + MIT1002_00745 0.63 -1.8
816,922 + MIT1002_00745 0.63 +0.9
816,967 + MIT1002_00745 0.65 +0.4
816,975 - MIT1002_00745 0.66 +0.3
817,025 - MIT1002_00745 0.69 -0.6
817,060 + MIT1002_00745 0.71 +0.4
817,061 + MIT1002_00745 0.71 +10.6
817,124 - MIT1002_00745 0.75 -0.5
817,207 - MIT1002_00745 0.80 -0.2
817,351 + MIT1002_00745 0.88 +0.9
817,352 - MIT1002_00745 0.88 +0.1
817,372 + MIT1002_00745 0.89 +0.2
817,372 + MIT1002_00745 0.89 -1.5
817,442 - +1.1
817,467 - +0.2
817,504 - +0.7
817,584 + +0.4
817,723 + -1.1
817,746 + -0.7
817,746 + -0.5
817,775 + +1.0
817,799 - -0.6
817,850 + -0.0
817,850 + +0.1
817,850 + -0.3
817,850 + -0.4
817,858 - -0.1
817,870 - +0.8
817,976 + +0.1
817,984 - +0.9
817,994 - -0.3
818,011 - -1.3
818,011 - +0.1
818,061 + -0.8
818,087 + MIT1002_00746 0.10 +0.1
818,105 + MIT1002_00746 0.12 -2.2
818,160 - MIT1002_00746 0.19 +1.1
818,206 - MIT1002_00746 0.24 -1.3
818,376 + MIT1002_00746 0.45 +1.0
818,382 + MIT1002_00746 0.45 -2.0
818,382 + MIT1002_00746 0.45 +0.5
818,392 + MIT1002_00746 0.47 +0.4
818,400 + MIT1002_00746 0.48 +0.5
818,400 + MIT1002_00746 0.48 +0.1
818,400 + MIT1002_00746 0.48 -0.1
818,400 + MIT1002_00746 0.48 +0.4
818,408 - MIT1002_00746 0.49 +0.9
818,408 - MIT1002_00746 0.49 -1.6
818,472 + MIT1002_00746 0.56 +1.1
818,479 - MIT1002_00746 0.57 -1.3
818,510 + MIT1002_00746 0.61 -0.8
818,510 + MIT1002_00746 0.61 -1.8
818,520 - MIT1002_00746 0.62 -0.3
818,529 + MIT1002_00746 0.63 +0.2

Or see this region's nucleotide sequence