Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00678

Experiment: monoculture; Experiment A, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00677 and MIT1002_00678 are separated by 178 nucleotidesMIT1002_00678 and MIT1002_00679 are separated by 102 nucleotidesMIT1002_00679 and MIT1002_00680 are separated by 278 nucleotidesMIT1002_00680 and MIT1002_00681 are separated by 1 nucleotides MIT1002_00677: MIT1002_00677 - Fructose-1-phosphate phosphatase YqaB, at 741,476 to 742,177 _00677 MIT1002_00678: MIT1002_00678 - putative periplasmic lipoprotein, at 742,356 to 743,651 _00678 MIT1002_00679: MIT1002_00679 - hypothetical protein, at 743,754 to 744,086 _00679 MIT1002_00680: MIT1002_00680 - hypothetical protein, at 744,365 to 744,556 _00680 MIT1002_00681: MIT1002_00681 - L-lysine 2,3-aminomutase, at 744,558 to 745,583 _00681 Position (kb) 742 743 744Strain fitness (log2 ratio) -2 -1 0 1 2 3at 741.392 kb on + strandat 741.392 kb on + strandat 741.392 kb on + strandat 741.400 kb on - strandat 741.400 kb on - strandat 741.400 kb on - strandat 741.408 kb on - strandat 741.417 kb on + strandat 741.425 kb on - strandat 741.484 kb on + strandat 741.501 kb on - strandat 741.727 kb on + strand, within MIT1002_00677at 741.818 kb on - strand, within MIT1002_00677at 741.818 kb on - strand, within MIT1002_00677at 741.840 kb on - strand, within MIT1002_00677at 741.848 kb on - strand, within MIT1002_00677at 741.916 kb on - strand, within MIT1002_00677at 741.941 kb on + strand, within MIT1002_00677at 741.949 kb on + strand, within MIT1002_00677at 741.949 kb on + strand, within MIT1002_00677at 741.957 kb on - strand, within MIT1002_00677at 741.977 kb on - strand, within MIT1002_00677at 741.977 kb on - strand, within MIT1002_00677at 742.064 kb on + strand, within MIT1002_00677at 742.064 kb on + strand, within MIT1002_00677at 742.072 kb on - strand, within MIT1002_00677at 742.072 kb on - strand, within MIT1002_00677at 742.127 kb on + strandat 742.132 kb on + strandat 742.191 kb on + strandat 742.256 kb on - strandat 742.261 kb on + strandat 742.377 kb on - strandat 742.407 kb on + strandat 742.479 kb on - strandat 742.488 kb on + strand, within MIT1002_00678at 742.488 kb on + strand, within MIT1002_00678at 742.492 kb on - strand, within MIT1002_00678at 742.498 kb on - strand, within MIT1002_00678at 742.498 kb on - strand, within MIT1002_00678at 742.515 kb on - strand, within MIT1002_00678at 742.518 kb on - strand, within MIT1002_00678at 742.562 kb on - strand, within MIT1002_00678at 742.577 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.610 kb on + strand, within MIT1002_00678at 742.616 kb on - strand, within MIT1002_00678at 742.616 kb on - strand, within MIT1002_00678at 742.616 kb on - strand, within MIT1002_00678at 742.631 kb on + strand, within MIT1002_00678at 742.631 kb on + strand, within MIT1002_00678at 742.631 kb on + strand, within MIT1002_00678at 742.711 kb on - strand, within MIT1002_00678at 742.723 kb on + strand, within MIT1002_00678at 742.775 kb on - strand, within MIT1002_00678at 742.834 kb on - strand, within MIT1002_00678at 742.918 kb on + strand, within MIT1002_00678at 742.918 kb on + strand, within MIT1002_00678at 743.039 kb on - strand, within MIT1002_00678at 743.127 kb on + strand, within MIT1002_00678at 743.201 kb on - strand, within MIT1002_00678at 743.237 kb on + strand, within MIT1002_00678at 743.237 kb on + strand, within MIT1002_00678at 743.245 kb on + strand, within MIT1002_00678at 743.245 kb on + strand, within MIT1002_00678at 743.245 kb on + strand, within MIT1002_00678at 743.268 kb on - strand, within MIT1002_00678at 743.298 kb on + strand, within MIT1002_00678at 743.366 kb on + strand, within MIT1002_00678at 743.382 kb on + strand, within MIT1002_00678at 743.389 kb on - strand, within MIT1002_00678at 743.390 kb on - strand, within MIT1002_00678at 743.443 kb on - strand, within MIT1002_00678at 743.447 kb on + strand, within MIT1002_00678at 743.494 kb on - strand, within MIT1002_00678at 743.549 kb on + strandat 743.564 kb on + strandat 743.572 kb on - strandat 743.660 kb on - strandat 743.668 kb on - strandat 743.668 kb on - strandat 743.729 kb on - strandat 743.788 kb on + strand, within MIT1002_00679at 743.910 kb on - strand, within MIT1002_00679at 743.923 kb on + strand, within MIT1002_00679at 743.925 kb on + strand, within MIT1002_00679at 744.021 kb on - strand, within MIT1002_00679at 744.029 kb on + strand, within MIT1002_00679at 744.047 kb on + strand, within MIT1002_00679at 744.069 kb on - strandat 744.119 kb on + strandat 744.143 kb on - strandat 744.169 kb on - strandat 744.286 kb on + strandat 744.301 kb on - strandat 744.303 kb on + strandat 744.303 kb on + strandat 744.309 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.311 kb on - strandat 744.378 kb on + strandat 744.386 kb on - strand, within MIT1002_00680at 744.386 kb on - strand, within MIT1002_00680at 744.387 kb on + strand, within MIT1002_00680at 744.407 kb on + strand, within MIT1002_00680at 744.423 kb on + strand, within MIT1002_00680at 744.423 kb on + strand, within MIT1002_00680at 744.431 kb on - strand, within MIT1002_00680at 744.441 kb on + strand, within MIT1002_00680at 744.478 kb on + strand, within MIT1002_00680at 744.539 kb on + strandat 744.547 kb on - strandat 744.569 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
remove
741,392 + +1.1
741,392 + +0.8
741,392 + +1.0
741,400 - +0.7
741,400 - -0.2
741,400 - +0.6
741,408 - +0.2
741,417 + +0.2
741,425 - -0.9
741,484 + -0.0
741,501 - +0.6
741,727 + MIT1002_00677 0.36 +0.1
741,818 - MIT1002_00677 0.49 +1.5
741,818 - MIT1002_00677 0.49 -1.4
741,840 - MIT1002_00677 0.52 -1.8
741,848 - MIT1002_00677 0.53 -0.0
741,916 - MIT1002_00677 0.63 +0.8
741,941 + MIT1002_00677 0.66 +0.9
741,949 + MIT1002_00677 0.67 -0.9
741,949 + MIT1002_00677 0.67 -1.6
741,957 - MIT1002_00677 0.69 +0.1
741,977 - MIT1002_00677 0.71 +0.9
741,977 - MIT1002_00677 0.71 +1.8
742,064 + MIT1002_00677 0.84 +1.0
742,064 + MIT1002_00677 0.84 -1.2
742,072 - MIT1002_00677 0.85 +1.2
742,072 - MIT1002_00677 0.85 +0.1
742,127 + -1.2
742,132 + +0.4
742,191 + -0.4
742,256 - -1.9
742,261 + -0.8
742,377 - -1.4
742,407 + -0.0
742,479 - +1.7
742,488 + MIT1002_00678 0.10 +0.5
742,488 + MIT1002_00678 0.10 +0.4
742,492 - MIT1002_00678 0.10 +0.0
742,498 - MIT1002_00678 0.11 +0.0
742,498 - MIT1002_00678 0.11 -2.2
742,515 - MIT1002_00678 0.12 -1.7
742,518 - MIT1002_00678 0.12 -0.8
742,562 - MIT1002_00678 0.16 +0.6
742,577 + MIT1002_00678 0.17 -0.3
742,608 + MIT1002_00678 0.19 +0.5
742,608 + MIT1002_00678 0.19 +1.1
742,608 + MIT1002_00678 0.19 -0.9
742,608 + MIT1002_00678 0.19 -0.4
742,608 + MIT1002_00678 0.19 +0.2
742,610 + MIT1002_00678 0.20 -1.3
742,616 - MIT1002_00678 0.20 +1.8
742,616 - MIT1002_00678 0.20 -0.1
742,616 - MIT1002_00678 0.20 -1.2
742,631 + MIT1002_00678 0.21 -0.4
742,631 + MIT1002_00678 0.21 -0.7
742,631 + MIT1002_00678 0.21 -0.1
742,711 - MIT1002_00678 0.27 +0.8
742,723 + MIT1002_00678 0.28 -1.2
742,775 - MIT1002_00678 0.32 +1.3
742,834 - MIT1002_00678 0.37 -1.2
742,918 + MIT1002_00678 0.43 -1.4
742,918 + MIT1002_00678 0.43 -0.5
743,039 - MIT1002_00678 0.53 -0.1
743,127 + MIT1002_00678 0.59 -0.5
743,201 - MIT1002_00678 0.65 +0.1
743,237 + MIT1002_00678 0.68 +0.7
743,237 + MIT1002_00678 0.68 -0.8
743,245 + MIT1002_00678 0.69 +1.4
743,245 + MIT1002_00678 0.69 +0.0
743,245 + MIT1002_00678 0.69 -0.1
743,268 - MIT1002_00678 0.70 +0.9
743,298 + MIT1002_00678 0.73 +0.2
743,366 + MIT1002_00678 0.78 -0.5
743,382 + MIT1002_00678 0.79 +1.3
743,389 - MIT1002_00678 0.80 -0.2
743,390 - MIT1002_00678 0.80 -0.4
743,443 - MIT1002_00678 0.84 +1.2
743,447 + MIT1002_00678 0.84 +1.1
743,494 - MIT1002_00678 0.88 -1.6
743,549 + -1.2
743,564 + -0.2
743,572 - +0.0
743,660 - -0.4
743,668 - -1.3
743,668 - -0.7
743,729 - +0.2
743,788 + MIT1002_00679 0.10 +1.0
743,910 - MIT1002_00679 0.47 -0.2
743,923 + MIT1002_00679 0.51 +1.8
743,925 + MIT1002_00679 0.51 -0.5
744,021 - MIT1002_00679 0.80 +0.0
744,029 + MIT1002_00679 0.83 +2.2
744,047 + MIT1002_00679 0.88 +1.5
744,069 - -1.3
744,119 + -2.7
744,143 - +0.7
744,169 - -0.0
744,286 + -0.5
744,301 - +0.4
744,303 + -0.2
744,303 + -0.7
744,309 - +1.0
744,311 - -1.9
744,311 - -0.7
744,311 - +3.6
744,311 - -0.4
744,378 + -0.2
744,386 - MIT1002_00680 0.11 -0.3
744,386 - MIT1002_00680 0.11 +0.3
744,387 + MIT1002_00680 0.11 +1.4
744,407 + MIT1002_00680 0.22 -0.7
744,423 + MIT1002_00680 0.30 +0.7
744,423 + MIT1002_00680 0.30 +0.1
744,431 - MIT1002_00680 0.34 -0.7
744,441 + MIT1002_00680 0.40 +0.3
744,478 + MIT1002_00680 0.59 -0.6
744,539 + +0.5
744,547 - -2.2
744,569 + +0.4

Or see this region's nucleotide sequence