Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00670 and MIT1002_00671 are separated by 295 nucleotides MIT1002_00671 and MIT1002_00672 overlap by 52 nucleotides MIT1002_00672 and MIT1002_00673 overlap by 4 nucleotides MIT1002_00673 and MIT1002_00674 are separated by 127 nucleotides
MIT1002_00670: MIT1002_00670 - Outer membrane protein TolC precursor, at 734,191 to 735,564
_00670
MIT1002_00671: MIT1002_00671 - ADP-ribose pyrophosphatase, at 735,860 to 736,486
_00671
MIT1002_00672: MIT1002_00672 - putative dehydrogenase, at 736,435 to 736,923
_00672
MIT1002_00673: MIT1002_00673 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 736,920 to 737,723
_00673
MIT1002_00674: MIT1002_00674 - esterase YqiA, at 737,851 to 738,432
_00674
Position (kb) 736
737 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 735.614 kb on - strand at 735.627 kb on + strand at 735.795 kb on + strand at 735.822 kb on + strand at 735.910 kb on + strand at 735.910 kb on + strand at 735.910 kb on + strand at 735.918 kb on - strand at 735.918 kb on - strand at 735.993 kb on - strand, within MIT1002_00671 at 736.020 kb on + strand, within MIT1002_00671 at 736.020 kb on + strand, within MIT1002_00671 at 736.094 kb on - strand, within MIT1002_00671 at 736.139 kb on + strand, within MIT1002_00671 at 736.161 kb on + strand, within MIT1002_00671 at 736.176 kb on + strand, within MIT1002_00671 at 736.177 kb on - strand, within MIT1002_00671 at 736.186 kb on + strand, within MIT1002_00671 at 736.186 kb on - strand, within MIT1002_00671 at 736.198 kb on + strand, within MIT1002_00671 at 736.237 kb on + strand, within MIT1002_00671 at 736.299 kb on - strand, within MIT1002_00671 at 736.321 kb on - strand, within MIT1002_00671 at 736.367 kb on - strand, within MIT1002_00671 at 736.421 kb on - strand, within MIT1002_00671 at 736.469 kb on - strand at 736.471 kb on + strand at 736.497 kb on - strand, within MIT1002_00672 at 736.553 kb on + strand, within MIT1002_00672 at 736.556 kb on - strand, within MIT1002_00672 at 736.561 kb on - strand, within MIT1002_00672 at 736.594 kb on + strand, within MIT1002_00672 at 736.602 kb on - strand, within MIT1002_00672 at 736.619 kb on + strand, within MIT1002_00672 at 736.619 kb on + strand, within MIT1002_00672 at 736.619 kb on + strand, within MIT1002_00672 at 736.619 kb on + strand, within MIT1002_00672 at 736.627 kb on - strand, within MIT1002_00672 at 736.627 kb on - strand, within MIT1002_00672 at 736.637 kb on - strand, within MIT1002_00672 at 736.643 kb on + strand, within MIT1002_00672 at 736.668 kb on - strand, within MIT1002_00672 at 736.699 kb on - strand, within MIT1002_00672 at 736.699 kb on - strand, within MIT1002_00672 at 736.730 kb on - strand, within MIT1002_00672 at 736.732 kb on - strand, within MIT1002_00672 at 736.732 kb on - strand, within MIT1002_00672 at 736.852 kb on + strand, within MIT1002_00672 at 736.898 kb on + strand at 736.898 kb on + strand at 736.906 kb on - strand at 736.910 kb on + strand at 737.043 kb on + strand, within MIT1002_00673 at 737.072 kb on - strand, within MIT1002_00673 at 737.086 kb on + strand, within MIT1002_00673 at 737.128 kb on - strand, within MIT1002_00673 at 737.138 kb on - strand, within MIT1002_00673 at 737.283 kb on - strand, within MIT1002_00673 at 737.283 kb on - strand, within MIT1002_00673 at 737.370 kb on - strand, within MIT1002_00673 at 737.384 kb on + strand, within MIT1002_00673 at 737.460 kb on + strand, within MIT1002_00673 at 737.468 kb on - strand, within MIT1002_00673 at 737.527 kb on - strand, within MIT1002_00673 at 737.527 kb on - strand, within MIT1002_00673 at 737.528 kb on - strand, within MIT1002_00673 at 737.643 kb on - strand at 737.726 kb on - strand at 737.738 kb on + strand at 737.796 kb on + strand at 737.818 kb on + strand at 737.869 kb on + strand at 737.912 kb on + strand, within MIT1002_00674 at 737.920 kb on - strand, within MIT1002_00674
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 735,614 - +0.6 735,627 + +0.1 735,795 + -0.6 735,822 + +0.3 735,910 + +0.3 735,910 + -0.7 735,910 + +1.3 735,918 - +1.3 735,918 - -0.3 735,993 - MIT1002_00671 0.21 -0.3 736,020 + MIT1002_00671 0.26 +0.8 736,020 + MIT1002_00671 0.26 -0.4 736,094 - MIT1002_00671 0.37 +1.1 736,139 + MIT1002_00671 0.44 +0.4 736,161 + MIT1002_00671 0.48 -1.9 736,176 + MIT1002_00671 0.50 -2.4 736,177 - MIT1002_00671 0.51 +0.6 736,186 + MIT1002_00671 0.52 -0.8 736,186 - MIT1002_00671 0.52 -2.2 736,198 + MIT1002_00671 0.54 +0.9 736,237 + MIT1002_00671 0.60 -0.8 736,299 - MIT1002_00671 0.70 +0.9 736,321 - MIT1002_00671 0.74 +0.5 736,367 - MIT1002_00671 0.81 -1.7 736,421 - MIT1002_00671 0.89 +0.6 736,469 - -3.3 736,471 + -0.4 736,497 - MIT1002_00672 0.13 -2.7 736,553 + MIT1002_00672 0.24 +0.3 736,556 - MIT1002_00672 0.25 -2.9 736,561 - MIT1002_00672 0.26 -1.5 736,594 + MIT1002_00672 0.33 -1.4 736,602 - MIT1002_00672 0.34 -1.2 736,619 + MIT1002_00672 0.38 +0.1 736,619 + MIT1002_00672 0.38 -3.5 736,619 + MIT1002_00672 0.38 -2.4 736,619 + MIT1002_00672 0.38 -1.4 736,627 - MIT1002_00672 0.39 -2.8 736,627 - MIT1002_00672 0.39 -3.3 736,637 - MIT1002_00672 0.41 -1.4 736,643 + MIT1002_00672 0.43 +0.3 736,668 - MIT1002_00672 0.48 -4.3 736,699 - MIT1002_00672 0.54 -2.7 736,699 - MIT1002_00672 0.54 -2.7 736,730 - MIT1002_00672 0.60 -1.3 736,732 - MIT1002_00672 0.61 -1.6 736,732 - MIT1002_00672 0.61 -0.9 736,852 + MIT1002_00672 0.85 -2.2 736,898 + -3.6 736,898 + -2.8 736,906 - -2.9 736,910 + -1.4 737,043 + MIT1002_00673 0.15 -3.5 737,072 - MIT1002_00673 0.19 -1.9 737,086 + MIT1002_00673 0.21 -1.8 737,128 - MIT1002_00673 0.26 -3.4 737,138 - MIT1002_00673 0.27 -2.6 737,283 - MIT1002_00673 0.45 -2.0 737,283 - MIT1002_00673 0.45 -1.5 737,370 - MIT1002_00673 0.56 +0.6 737,384 + MIT1002_00673 0.58 -1.5 737,460 + MIT1002_00673 0.67 -8.1 737,468 - MIT1002_00673 0.68 -2.7 737,527 - MIT1002_00673 0.75 -2.0 737,527 - MIT1002_00673 0.75 -0.9 737,528 - MIT1002_00673 0.76 -2.7 737,643 - -2.9 737,726 - -0.1 737,738 + -0.2 737,796 + -0.1 737,818 + +0.3 737,869 + -1.6 737,912 + MIT1002_00674 0.10 +0.6 737,920 - MIT1002_00674 0.12 -1.0
Or see this region's nucleotide sequence