Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00654 and MIT1002_00655 are separated by 85 nucleotides MIT1002_00655 and MIT1002_00656 are separated by 43 nucleotides MIT1002_00656 and MIT1002_00657 are separated by 142 nucleotides
MIT1002_00654: MIT1002_00654 - Signal transduction histidine-protein kinase BarA, at 709,688 to 711,874
_00654
MIT1002_00655: MIT1002_00655 - muropeptide transporter, at 711,960 to 713,306
_00655
MIT1002_00656: MIT1002_00656 - hypothetical protein, at 713,350 to 713,673
_00656
MIT1002_00657: MIT1002_00657 - hypothetical protein, at 713,816 to 714,703
_00657
Position (kb) 711
712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 711.044 kb on - strand, within MIT1002_00654 at 711.081 kb on + strand, within MIT1002_00654 at 711.110 kb on - strand, within MIT1002_00654 at 711.150 kb on + strand, within MIT1002_00654 at 711.310 kb on + strand, within MIT1002_00654 at 711.351 kb on + strand, within MIT1002_00654 at 711.351 kb on + strand, within MIT1002_00654 at 711.351 kb on + strand, within MIT1002_00654 at 711.354 kb on - strand, within MIT1002_00654 at 711.357 kb on + strand, within MIT1002_00654 at 711.359 kb on - strand, within MIT1002_00654 at 711.441 kb on + strand, within MIT1002_00654 at 711.446 kb on + strand, within MIT1002_00654 at 711.449 kb on - strand, within MIT1002_00654 at 711.463 kb on + strand, within MIT1002_00654 at 711.503 kb on - strand, within MIT1002_00654 at 711.511 kb on - strand, within MIT1002_00654 at 711.564 kb on + strand, within MIT1002_00654 at 711.591 kb on - strand, within MIT1002_00654 at 711.591 kb on - strand, within MIT1002_00654 at 711.604 kb on - strand, within MIT1002_00654 at 711.663 kb on + strand at 711.663 kb on + strand at 711.709 kb on + strand at 711.709 kb on + strand at 711.777 kb on + strand at 711.779 kb on + strand at 711.789 kb on + strand at 711.874 kb on + strand at 712.113 kb on + strand, within MIT1002_00655 at 712.129 kb on - strand, within MIT1002_00655 at 712.139 kb on - strand, within MIT1002_00655 at 712.156 kb on - strand, within MIT1002_00655 at 712.306 kb on + strand, within MIT1002_00655 at 712.306 kb on + strand, within MIT1002_00655 at 712.306 kb on + strand, within MIT1002_00655 at 712.314 kb on - strand, within MIT1002_00655 at 712.333 kb on - strand, within MIT1002_00655 at 712.404 kb on - strand, within MIT1002_00655 at 712.465 kb on + strand, within MIT1002_00655 at 712.580 kb on + strand, within MIT1002_00655 at 712.585 kb on + strand, within MIT1002_00655 at 712.692 kb on + strand, within MIT1002_00655 at 712.702 kb on + strand, within MIT1002_00655 at 712.780 kb on - strand, within MIT1002_00655 at 712.788 kb on + strand, within MIT1002_00655 at 712.788 kb on + strand, within MIT1002_00655 at 712.788 kb on + strand, within MIT1002_00655 at 712.806 kb on + strand, within MIT1002_00655 at 712.817 kb on + strand, within MIT1002_00655 at 712.859 kb on - strand, within MIT1002_00655 at 712.896 kb on - strand, within MIT1002_00655 at 712.944 kb on + strand, within MIT1002_00655 at 712.967 kb on + strand, within MIT1002_00655 at 712.976 kb on + strand, within MIT1002_00655 at 712.984 kb on - strand, within MIT1002_00655 at 712.984 kb on - strand, within MIT1002_00655 at 712.984 kb on - strand, within MIT1002_00655 at 713.001 kb on + strand, within MIT1002_00655 at 713.001 kb on + strand, within MIT1002_00655 at 713.001 kb on + strand, within MIT1002_00655 at 713.001 kb on + strand, within MIT1002_00655 at 713.009 kb on - strand, within MIT1002_00655 at 713.009 kb on - strand, within MIT1002_00655 at 713.009 kb on - strand, within MIT1002_00655 at 713.009 kb on - strand, within MIT1002_00655 at 713.009 kb on - strand, within MIT1002_00655 at 713.023 kb on + strand, within MIT1002_00655 at 713.030 kb on - strand, within MIT1002_00655 at 713.034 kb on + strand, within MIT1002_00655 at 713.066 kb on + strand, within MIT1002_00655 at 713.066 kb on + strand, within MIT1002_00655 at 713.074 kb on - strand, within MIT1002_00655 at 713.118 kb on + strand, within MIT1002_00655 at 713.126 kb on - strand, within MIT1002_00655 at 713.133 kb on + strand, within MIT1002_00655 at 713.141 kb on - strand, within MIT1002_00655 at 713.141 kb on - strand, within MIT1002_00655 at 713.182 kb on + strand at 713.359 kb on + strand at 713.513 kb on + strand, within MIT1002_00656 at 713.513 kb on + strand, within MIT1002_00656 at 713.521 kb on - strand, within MIT1002_00656 at 713.521 kb on - strand, within MIT1002_00656 at 713.531 kb on - strand, within MIT1002_00656 at 713.531 kb on - strand, within MIT1002_00656 at 713.538 kb on - strand, within MIT1002_00656 at 713.594 kb on - strand, within MIT1002_00656 at 713.603 kb on - strand, within MIT1002_00656 at 713.669 kb on + strand at 713.712 kb on - strand at 713.720 kb on - strand at 713.723 kb on + strand at 713.730 kb on + strand at 713.730 kb on + strand at 713.730 kb on + strand at 713.730 kb on + strand at 713.735 kb on + strand at 713.738 kb on - strand at 713.738 kb on - strand at 713.738 kb on - strand at 713.738 kb on - strand at 713.738 kb on - strand at 713.738 kb on - strand at 713.738 kb on - strand at 713.738 kb on - strand at 713.738 kb on - strand at 713.738 kb on - strand at 713.742 kb on + strand at 713.742 kb on + strand at 713.993 kb on - strand, within MIT1002_00657 at 713.996 kb on - strand, within MIT1002_00657 at 713.999 kb on + strand, within MIT1002_00657 at 714.046 kb on + strand, within MIT1002_00657 at 714.122 kb on - strand, within MIT1002_00657 at 714.125 kb on + strand, within MIT1002_00657 at 714.159 kb on + strand, within MIT1002_00657 at 714.167 kb on - strand, within MIT1002_00657 at 714.167 kb on - strand, within MIT1002_00657 at 714.175 kb on - strand, within MIT1002_00657 at 714.176 kb on - strand, within MIT1002_00657 at 714.176 kb on - strand, within MIT1002_00657 at 714.178 kb on + strand, within MIT1002_00657 at 714.180 kb on + strand, within MIT1002_00657 at 714.187 kb on + strand, within MIT1002_00657 at 714.195 kb on - strand, within MIT1002_00657 at 714.195 kb on - strand, within MIT1002_00657 at 714.204 kb on - strand, within MIT1002_00657 at 714.247 kb on + strand, within MIT1002_00657 at 714.294 kb on + strand, within MIT1002_00657 at 714.302 kb on - strand, within MIT1002_00657
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 711,044 - MIT1002_00654 0.62 -2.5 711,081 + MIT1002_00654 0.64 +2.2 711,110 - MIT1002_00654 0.65 +2.6 711,150 + MIT1002_00654 0.67 +2.3 711,310 + MIT1002_00654 0.74 +1.3 711,351 + MIT1002_00654 0.76 +0.1 711,351 + MIT1002_00654 0.76 -1.3 711,351 + MIT1002_00654 0.76 +1.9 711,354 - MIT1002_00654 0.76 +1.1 711,357 + MIT1002_00654 0.76 -0.2 711,359 - MIT1002_00654 0.76 -0.2 711,441 + MIT1002_00654 0.80 -1.6 711,446 + MIT1002_00654 0.80 -0.2 711,449 - MIT1002_00654 0.81 +0.6 711,463 + MIT1002_00654 0.81 +0.9 711,503 - MIT1002_00654 0.83 -0.8 711,511 - MIT1002_00654 0.83 -1.9 711,564 + MIT1002_00654 0.86 -2.3 711,591 - MIT1002_00654 0.87 +1.2 711,591 - MIT1002_00654 0.87 +0.9 711,604 - MIT1002_00654 0.88 +1.4 711,663 + +2.4 711,663 + +1.3 711,709 + +0.3 711,709 + +1.2 711,777 + -1.0 711,779 + +0.1 711,789 + +0.6 711,874 + -1.6 712,113 + MIT1002_00655 0.11 -1.3 712,129 - MIT1002_00655 0.13 +1.9 712,139 - MIT1002_00655 0.13 -1.9 712,156 - MIT1002_00655 0.15 +1.6 712,306 + MIT1002_00655 0.26 -0.8 712,306 + MIT1002_00655 0.26 +1.1 712,306 + MIT1002_00655 0.26 +4.5 712,314 - MIT1002_00655 0.26 +0.1 712,333 - MIT1002_00655 0.28 +0.6 712,404 - MIT1002_00655 0.33 +0.5 712,465 + MIT1002_00655 0.37 +1.5 712,580 + MIT1002_00655 0.46 -1.5 712,585 + MIT1002_00655 0.46 +0.7 712,692 + MIT1002_00655 0.54 -0.2 712,702 + MIT1002_00655 0.55 +2.5 712,780 - MIT1002_00655 0.61 +0.3 712,788 + MIT1002_00655 0.61 +1.0 712,788 + MIT1002_00655 0.61 +1.7 712,788 + MIT1002_00655 0.61 +0.7 712,806 + MIT1002_00655 0.63 +0.3 712,817 + MIT1002_00655 0.64 +0.4 712,859 - MIT1002_00655 0.67 +0.0 712,896 - MIT1002_00655 0.69 -0.1 712,944 + MIT1002_00655 0.73 +0.6 712,967 + MIT1002_00655 0.75 +2.6 712,976 + MIT1002_00655 0.75 -0.3 712,984 - MIT1002_00655 0.76 +1.6 712,984 - MIT1002_00655 0.76 -0.4 712,984 - MIT1002_00655 0.76 +0.1 713,001 + MIT1002_00655 0.77 -2.6 713,001 + MIT1002_00655 0.77 +0.6 713,001 + MIT1002_00655 0.77 +0.3 713,001 + MIT1002_00655 0.77 +1.5 713,009 - MIT1002_00655 0.78 +3.2 713,009 - MIT1002_00655 0.78 +1.0 713,009 - MIT1002_00655 0.78 +0.0 713,009 - MIT1002_00655 0.78 +0.6 713,009 - MIT1002_00655 0.78 +0.5 713,023 + MIT1002_00655 0.79 -1.0 713,030 - MIT1002_00655 0.79 -0.3 713,034 + MIT1002_00655 0.80 -1.0 713,066 + MIT1002_00655 0.82 -0.7 713,066 + MIT1002_00655 0.82 +1.4 713,074 - MIT1002_00655 0.83 -0.2 713,118 + MIT1002_00655 0.86 +3.7 713,126 - MIT1002_00655 0.87 -0.1 713,133 + MIT1002_00655 0.87 +0.5 713,141 - MIT1002_00655 0.88 -0.2 713,141 - MIT1002_00655 0.88 +1.5 713,182 + -0.6 713,359 + -0.9 713,513 + MIT1002_00656 0.50 -0.1 713,513 + MIT1002_00656 0.50 +0.6 713,521 - MIT1002_00656 0.53 +0.0 713,521 - MIT1002_00656 0.53 +0.6 713,531 - MIT1002_00656 0.56 +0.5 713,531 - MIT1002_00656 0.56 +0.6 713,538 - MIT1002_00656 0.58 -1.9 713,594 - MIT1002_00656 0.75 +0.1 713,603 - MIT1002_00656 0.78 -1.5 713,669 + +0.1 713,712 - -1.2 713,720 - +0.5 713,723 + +1.2 713,730 + -0.6 713,730 + -0.4 713,730 + +0.3 713,730 + -1.5 713,735 + -0.4 713,738 - +0.9 713,738 - -1.7 713,738 - -3.0 713,738 - -0.2 713,738 - -0.5 713,738 - -0.8 713,738 - +1.9 713,738 - -0.0 713,738 - -1.4 713,738 - -0.5 713,742 + +1.1 713,742 + +0.6 713,993 - MIT1002_00657 0.20 +3.2 713,996 - MIT1002_00657 0.20 -0.7 713,999 + MIT1002_00657 0.21 +0.4 714,046 + MIT1002_00657 0.26 -0.3 714,122 - MIT1002_00657 0.34 -0.3 714,125 + MIT1002_00657 0.35 +0.1 714,159 + MIT1002_00657 0.39 -1.4 714,167 - MIT1002_00657 0.40 -0.2 714,167 - MIT1002_00657 0.40 +0.9 714,175 - MIT1002_00657 0.40 -1.0 714,176 - MIT1002_00657 0.41 -1.4 714,176 - MIT1002_00657 0.41 -0.1 714,178 + MIT1002_00657 0.41 +2.0 714,180 + MIT1002_00657 0.41 +0.3 714,187 + MIT1002_00657 0.42 +0.6 714,195 - MIT1002_00657 0.43 -0.5 714,195 - MIT1002_00657 0.43 -0.8 714,204 - MIT1002_00657 0.44 -0.7 714,247 + MIT1002_00657 0.49 -0.8 714,294 + MIT1002_00657 0.54 -0.0 714,302 - MIT1002_00657 0.55 +0.5
Or see this region's nucleotide sequence