Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00642

Experiment: monoculture; Experiment A, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00640 and MIT1002_00641 overlap by 29 nucleotidesMIT1002_00641 and MIT1002_00642 overlap by 7 nucleotidesMIT1002_00642 and MIT1002_00643 are separated by 133 nucleotidesMIT1002_00643 and MIT1002_00644 are separated by 172 nucleotides MIT1002_00640: MIT1002_00640 - putative efflux pump membrane transporter TtgB, at 692,526 to 695,753 _00640 MIT1002_00641: MIT1002_00641 - Transcriptional regulatory protein QseB, at 695,725 to 696,465 _00641 MIT1002_00642: MIT1002_00642 - Sensor protein BasS, at 696,459 to 697,808 _00642 MIT1002_00643: MIT1002_00643 - SH3 domain-containing protein, at 697,942 to 698,544 _00643 MIT1002_00644: MIT1002_00644 - hypothetical protein, at 698,717 to 700,222 _00644 Position (kb) 696 697 698Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 695.549 kb on - strandat 695.667 kb on + strandat 695.714 kb on + strandat 695.751 kb on + strandat 695.833 kb on - strand, within MIT1002_00641at 695.840 kb on + strand, within MIT1002_00641at 695.840 kb on + strand, within MIT1002_00641at 695.840 kb on + strand, within MIT1002_00641at 695.903 kb on + strand, within MIT1002_00641at 695.903 kb on + strand, within MIT1002_00641at 695.911 kb on - strand, within MIT1002_00641at 695.932 kb on + strand, within MIT1002_00641at 695.942 kb on - strand, within MIT1002_00641at 695.966 kb on + strand, within MIT1002_00641at 695.966 kb on + strand, within MIT1002_00641at 696.195 kb on + strand, within MIT1002_00641at 696.195 kb on + strand, within MIT1002_00641at 696.195 kb on + strand, within MIT1002_00641at 696.203 kb on - strand, within MIT1002_00641at 696.203 kb on - strand, within MIT1002_00641at 696.263 kb on - strand, within MIT1002_00641at 696.287 kb on - strand, within MIT1002_00641at 696.319 kb on + strand, within MIT1002_00641at 696.356 kb on - strand, within MIT1002_00641at 696.384 kb on + strand, within MIT1002_00641at 696.392 kb on - strandat 696.399 kb on + strandat 696.399 kb on + strandat 696.416 kb on + strandat 696.419 kb on - strandat 696.469 kb on - strandat 696.489 kb on - strandat 696.496 kb on + strandat 696.515 kb on - strandat 696.541 kb on + strandat 696.547 kb on - strandat 696.554 kb on - strandat 696.581 kb on - strandat 696.707 kb on - strand, within MIT1002_00642at 696.725 kb on + strand, within MIT1002_00642at 696.732 kb on - strand, within MIT1002_00642at 696.732 kb on - strand, within MIT1002_00642at 696.732 kb on - strand, within MIT1002_00642at 696.732 kb on - strand, within MIT1002_00642at 696.742 kb on - strand, within MIT1002_00642at 696.848 kb on - strand, within MIT1002_00642at 696.848 kb on - strand, within MIT1002_00642at 696.879 kb on - strand, within MIT1002_00642at 696.915 kb on - strand, within MIT1002_00642at 696.920 kb on - strand, within MIT1002_00642at 696.993 kb on + strand, within MIT1002_00642at 697.000 kb on + strand, within MIT1002_00642at 697.001 kb on - strand, within MIT1002_00642at 697.008 kb on - strand, within MIT1002_00642at 697.117 kb on + strand, within MIT1002_00642at 697.203 kb on - strand, within MIT1002_00642at 697.220 kb on - strand, within MIT1002_00642at 697.329 kb on + strand, within MIT1002_00642at 697.337 kb on - strand, within MIT1002_00642at 697.346 kb on + strand, within MIT1002_00642at 697.515 kb on + strand, within MIT1002_00642at 697.517 kb on + strand, within MIT1002_00642at 697.523 kb on - strand, within MIT1002_00642at 697.554 kb on - strand, within MIT1002_00642at 697.559 kb on - strand, within MIT1002_00642at 697.562 kb on + strand, within MIT1002_00642at 697.674 kb on - strandat 697.674 kb on - strandat 697.674 kb on - strandat 697.685 kb on + strandat 697.693 kb on - strandat 697.697 kb on + strandat 697.697 kb on + strandat 697.705 kb on - strandat 697.705 kb on - strandat 697.721 kb on + strandat 697.780 kb on + strandat 697.781 kb on + strandat 697.788 kb on - strandat 697.789 kb on - strandat 697.806 kb on - strandat 697.824 kb on + strandat 697.831 kb on + strandat 697.833 kb on - strandat 697.848 kb on + strandat 697.848 kb on + strandat 697.856 kb on - strandat 697.856 kb on - strandat 697.856 kb on - strandat 697.856 kb on - strandat 697.939 kb on + strandat 697.944 kb on + strandat 697.987 kb on - strandat 698.034 kb on + strand, within MIT1002_00643at 698.112 kb on - strand, within MIT1002_00643at 698.231 kb on + strand, within MIT1002_00643at 698.264 kb on + strand, within MIT1002_00643at 698.264 kb on + strand, within MIT1002_00643at 698.264 kb on + strand, within MIT1002_00643at 698.269 kb on - strand, within MIT1002_00643at 698.281 kb on + strand, within MIT1002_00643at 698.357 kb on + strand, within MIT1002_00643at 698.381 kb on - strand, within MIT1002_00643at 698.398 kb on + strand, within MIT1002_00643at 698.408 kb on + strand, within MIT1002_00643at 698.416 kb on - strand, within MIT1002_00643at 698.416 kb on - strand, within MIT1002_00643at 698.420 kb on - strand, within MIT1002_00643at 698.601 kb on + strandat 698.678 kb on + strandat 698.686 kb on - strandat 698.686 kb on - strandat 698.686 kb on - strandat 698.694 kb on + strandat 698.699 kb on + strandat 698.805 kb on + strandat 698.807 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
remove
695,549 - -1.6
695,667 + +0.9
695,714 + +1.1
695,751 + +0.6
695,833 - MIT1002_00641 0.15 -0.4
695,840 + MIT1002_00641 0.16 +0.3
695,840 + MIT1002_00641 0.16 -0.9
695,840 + MIT1002_00641 0.16 +0.4
695,903 + MIT1002_00641 0.24 +0.4
695,903 + MIT1002_00641 0.24 -1.2
695,911 - MIT1002_00641 0.25 +0.6
695,932 + MIT1002_00641 0.28 -0.5
695,942 - MIT1002_00641 0.29 +1.1
695,966 + MIT1002_00641 0.33 +0.0
695,966 + MIT1002_00641 0.33 -3.6
696,195 + MIT1002_00641 0.63 +0.6
696,195 + MIT1002_00641 0.63 -0.1
696,195 + MIT1002_00641 0.63 +2.0
696,203 - MIT1002_00641 0.65 +0.4
696,203 - MIT1002_00641 0.65 +0.6
696,263 - MIT1002_00641 0.73 -2.2
696,287 - MIT1002_00641 0.76 +0.3
696,319 + MIT1002_00641 0.80 +1.0
696,356 - MIT1002_00641 0.85 +1.2
696,384 + MIT1002_00641 0.89 -0.7
696,392 - -0.3
696,399 + -1.9
696,399 + +0.5
696,416 + -0.9
696,419 - +1.5
696,469 - +0.2
696,489 - -0.6
696,496 + -0.7
696,515 - +0.6
696,541 + +0.9
696,547 - +0.3
696,554 - +1.4
696,581 - +0.8
696,707 - MIT1002_00642 0.18 -0.6
696,725 + MIT1002_00642 0.20 +0.5
696,732 - MIT1002_00642 0.20 -0.5
696,732 - MIT1002_00642 0.20 +0.8
696,732 - MIT1002_00642 0.20 -2.1
696,732 - MIT1002_00642 0.20 +1.1
696,742 - MIT1002_00642 0.21 -2.8
696,848 - MIT1002_00642 0.29 -1.2
696,848 - MIT1002_00642 0.29 +1.1
696,879 - MIT1002_00642 0.31 -0.9
696,915 - MIT1002_00642 0.34 -0.4
696,920 - MIT1002_00642 0.34 -0.2
696,993 + MIT1002_00642 0.40 -0.3
697,000 + MIT1002_00642 0.40 +2.6
697,001 - MIT1002_00642 0.40 -2.0
697,008 - MIT1002_00642 0.41 +1.6
697,117 + MIT1002_00642 0.49 -0.5
697,203 - MIT1002_00642 0.55 -0.6
697,220 - MIT1002_00642 0.56 -1.6
697,329 + MIT1002_00642 0.64 -1.6
697,337 - MIT1002_00642 0.65 +0.6
697,346 + MIT1002_00642 0.66 -1.0
697,515 + MIT1002_00642 0.78 -2.0
697,517 + MIT1002_00642 0.78 +0.3
697,523 - MIT1002_00642 0.79 -1.5
697,554 - MIT1002_00642 0.81 +0.1
697,559 - MIT1002_00642 0.81 -0.7
697,562 + MIT1002_00642 0.82 -0.5
697,674 - -0.1
697,674 - +2.2
697,674 - -2.2
697,685 + -2.2
697,693 - +0.5
697,697 + -2.1
697,697 + +1.3
697,705 - +0.0
697,705 - -0.8
697,721 + +0.9
697,780 + -0.5
697,781 + -0.7
697,788 - -0.2
697,789 - +0.4
697,806 - +2.5
697,824 + +0.7
697,831 + -0.5
697,833 - -0.0
697,848 + -0.8
697,848 + -0.1
697,856 - -1.1
697,856 - -0.6
697,856 - +0.1
697,856 - +0.2
697,939 + +1.7
697,944 + -2.1
697,987 - -0.3
698,034 + MIT1002_00643 0.15 -0.8
698,112 - MIT1002_00643 0.28 -0.3
698,231 + MIT1002_00643 0.48 -1.1
698,264 + MIT1002_00643 0.53 -0.5
698,264 + MIT1002_00643 0.53 -0.6
698,264 + MIT1002_00643 0.53 -0.7
698,269 - MIT1002_00643 0.54 +0.1
698,281 + MIT1002_00643 0.56 -2.2
698,357 + MIT1002_00643 0.69 -1.1
698,381 - MIT1002_00643 0.73 -0.3
698,398 + MIT1002_00643 0.76 -1.1
698,408 + MIT1002_00643 0.77 -1.3
698,416 - MIT1002_00643 0.79 -0.4
698,416 - MIT1002_00643 0.79 +2.5
698,420 - MIT1002_00643 0.79 -1.1
698,601 + +0.4
698,678 + -0.6
698,686 - -1.1
698,686 - +2.1
698,686 - -0.6
698,694 + +1.0
698,699 + -0.8
698,805 + +0.5
698,807 + -0.6

Or see this region's nucleotide sequence