Experiment: monoculture; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00364 and MIT1002_00365 are separated by 36 nucleotides MIT1002_00365 and MIT1002_00366 are separated by 26 nucleotides
MIT1002_00364: MIT1002_00364 - Glucose--fructose oxidoreductase precursor, at 392,377 to 393,531
_00364
MIT1002_00365: MIT1002_00365 - Inosose dehydratase, at 393,568 to 394,635
_00365
MIT1002_00366: MIT1002_00366 - Putative nucleoside transporter YegT, at 394,662 to 395,879
_00366
Position (kb) 393
394
395 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 392.680 kb on + strand, within MIT1002_00364 at 392.710 kb on + strand, within MIT1002_00364 at 392.710 kb on + strand, within MIT1002_00364 at 392.734 kb on - strand, within MIT1002_00364 at 392.757 kb on - strand, within MIT1002_00364 at 392.773 kb on + strand, within MIT1002_00364 at 392.775 kb on - strand, within MIT1002_00364 at 392.778 kb on + strand, within MIT1002_00364 at 392.779 kb on + strand, within MIT1002_00364 at 392.787 kb on - strand, within MIT1002_00364 at 392.834 kb on + strand, within MIT1002_00364 at 392.881 kb on + strand, within MIT1002_00364 at 392.920 kb on + strand, within MIT1002_00364 at 392.920 kb on + strand, within MIT1002_00364 at 392.933 kb on - strand, within MIT1002_00364 at 392.967 kb on + strand, within MIT1002_00364 at 393.015 kb on - strand, within MIT1002_00364 at 393.020 kb on + strand, within MIT1002_00364 at 393.020 kb on + strand, within MIT1002_00364 at 393.020 kb on + strand, within MIT1002_00364 at 393.028 kb on - strand, within MIT1002_00364 at 393.039 kb on - strand, within MIT1002_00364 at 393.054 kb on + strand, within MIT1002_00364 at 393.081 kb on - strand, within MIT1002_00364 at 393.086 kb on - strand, within MIT1002_00364 at 393.091 kb on - strand, within MIT1002_00364 at 393.138 kb on + strand, within MIT1002_00364 at 393.146 kb on - strand, within MIT1002_00364 at 393.146 kb on - strand, within MIT1002_00364 at 393.146 kb on - strand, within MIT1002_00364 at 393.148 kb on + strand, within MIT1002_00364 at 393.184 kb on + strand, within MIT1002_00364 at 393.201 kb on - strand, within MIT1002_00364 at 393.222 kb on - strand, within MIT1002_00364 at 393.236 kb on + strand, within MIT1002_00364 at 393.241 kb on + strand, within MIT1002_00364 at 393.249 kb on - strand, within MIT1002_00364 at 393.261 kb on + strand, within MIT1002_00364 at 393.261 kb on + strand, within MIT1002_00364 at 393.261 kb on + strand, within MIT1002_00364 at 393.261 kb on + strand, within MIT1002_00364 at 393.261 kb on + strand, within MIT1002_00364 at 393.261 kb on + strand, within MIT1002_00364 at 393.269 kb on - strand, within MIT1002_00364 at 393.269 kb on - strand, within MIT1002_00364 at 393.284 kb on - strand, within MIT1002_00364 at 393.291 kb on + strand, within MIT1002_00364 at 393.294 kb on - strand, within MIT1002_00364 at 393.294 kb on - strand, within MIT1002_00364 at 393.294 kb on - strand, within MIT1002_00364 at 393.314 kb on + strand, within MIT1002_00364 at 393.314 kb on + strand, within MIT1002_00364 at 393.339 kb on + strand, within MIT1002_00364 at 393.412 kb on + strand, within MIT1002_00364 at 393.613 kb on + strand at 393.626 kb on - strand at 393.676 kb on - strand, within MIT1002_00365 at 393.683 kb on + strand, within MIT1002_00365 at 393.712 kb on - strand, within MIT1002_00365 at 393.718 kb on - strand, within MIT1002_00365 at 393.827 kb on - strand, within MIT1002_00365 at 393.840 kb on + strand, within MIT1002_00365 at 393.880 kb on - strand, within MIT1002_00365 at 393.886 kb on + strand, within MIT1002_00365 at 393.894 kb on - strand, within MIT1002_00365 at 393.894 kb on - strand, within MIT1002_00365 at 393.933 kb on + strand, within MIT1002_00365 at 393.933 kb on + strand, within MIT1002_00365 at 393.941 kb on - strand, within MIT1002_00365 at 394.014 kb on + strand, within MIT1002_00365 at 394.150 kb on + strand, within MIT1002_00365 at 394.153 kb on - strand, within MIT1002_00365 at 394.158 kb on - strand, within MIT1002_00365 at 394.189 kb on + strand, within MIT1002_00365 at 394.259 kb on + strand, within MIT1002_00365 at 394.299 kb on + strand, within MIT1002_00365 at 394.424 kb on - strand, within MIT1002_00365 at 394.436 kb on + strand, within MIT1002_00365 at 394.444 kb on - strand, within MIT1002_00365 at 394.444 kb on - strand, within MIT1002_00365 at 394.449 kb on - strand, within MIT1002_00365 at 394.458 kb on + strand, within MIT1002_00365 at 394.468 kb on + strand, within MIT1002_00365 at 394.468 kb on + strand, within MIT1002_00365 at 394.468 kb on + strand, within MIT1002_00365 at 394.472 kb on - strand, within MIT1002_00365 at 394.476 kb on - strand, within MIT1002_00365 at 394.476 kb on - strand, within MIT1002_00365 at 394.476 kb on - strand, within MIT1002_00365 at 394.476 kb on - strand, within MIT1002_00365 at 394.476 kb on - strand, within MIT1002_00365 at 394.476 kb on - strand, within MIT1002_00365 at 394.476 kb on - strand, within MIT1002_00365 at 394.487 kb on + strand, within MIT1002_00365 at 394.487 kb on + strand, within MIT1002_00365 at 394.495 kb on - strand, within MIT1002_00365 at 394.508 kb on + strand, within MIT1002_00365 at 394.508 kb on + strand, within MIT1002_00365 at 394.508 kb on + strand, within MIT1002_00365 at 394.508 kb on + strand, within MIT1002_00365 at 394.508 kb on + strand, within MIT1002_00365 at 394.508 kb on + strand, within MIT1002_00365 at 394.508 kb on + strand, within MIT1002_00365 at 394.508 kb on + strand, within MIT1002_00365 at 394.516 kb on - strand, within MIT1002_00365 at 394.559 kb on + strand at 394.590 kb on - strand at 394.590 kb on - strand at 394.596 kb on - strand at 394.668 kb on + strand at 394.669 kb on + strand at 394.669 kb on + strand at 394.669 kb on + strand at 394.698 kb on - strand at 394.784 kb on + strand, within MIT1002_00366 at 394.785 kb on - strand, within MIT1002_00366 at 394.794 kb on + strand, within MIT1002_00366 at 394.802 kb on - strand, within MIT1002_00366 at 394.802 kb on - strand, within MIT1002_00366 at 394.802 kb on - strand, within MIT1002_00366 at 394.830 kb on - strand, within MIT1002_00366 at 394.891 kb on - strand, within MIT1002_00366 at 394.910 kb on - strand, within MIT1002_00366 at 394.915 kb on - strand, within MIT1002_00366 at 394.920 kb on - strand, within MIT1002_00366 at 394.920 kb on - strand, within MIT1002_00366 at 394.939 kb on + strand, within MIT1002_00366 at 394.994 kb on + strand, within MIT1002_00366 at 394.999 kb on + strand, within MIT1002_00366 at 395.002 kb on - strand, within MIT1002_00366 at 395.002 kb on - strand, within MIT1002_00366 at 395.007 kb on - strand, within MIT1002_00366 at 395.007 kb on - strand, within MIT1002_00366 at 395.029 kb on + strand, within MIT1002_00366 at 395.037 kb on - strand, within MIT1002_00366 at 395.037 kb on - strand, within MIT1002_00366 at 395.094 kb on - strand, within MIT1002_00366 at 395.126 kb on + strand, within MIT1002_00366 at 395.165 kb on + strand, within MIT1002_00366 at 395.170 kb on + strand, within MIT1002_00366 at 395.178 kb on - strand, within MIT1002_00366 at 395.178 kb on - strand, within MIT1002_00366 at 395.200 kb on + strand, within MIT1002_00366 at 395.200 kb on + strand, within MIT1002_00366 at 395.210 kb on + strand, within MIT1002_00366 at 395.275 kb on + strand, within MIT1002_00366 at 395.328 kb on - strand, within MIT1002_00366 at 395.495 kb on + strand, within MIT1002_00366 at 395.503 kb on - strand, within MIT1002_00366 at 395.503 kb on - strand, within MIT1002_00366 at 395.503 kb on - strand, within MIT1002_00366 at 395.559 kb on + strand, within MIT1002_00366 at 395.604 kb on - strand, within MIT1002_00366
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5 remove 392,680 + MIT1002_00364 0.26 -0.5 392,710 + MIT1002_00364 0.29 -0.1 392,710 + MIT1002_00364 0.29 -0.2 392,734 - MIT1002_00364 0.31 -0.7 392,757 - MIT1002_00364 0.33 +1.7 392,773 + MIT1002_00364 0.34 +0.2 392,775 - MIT1002_00364 0.34 -1.2 392,778 + MIT1002_00364 0.35 +0.7 392,779 + MIT1002_00364 0.35 +0.5 392,787 - MIT1002_00364 0.35 +0.6 392,834 + MIT1002_00364 0.40 -1.1 392,881 + MIT1002_00364 0.44 -1.0 392,920 + MIT1002_00364 0.47 -0.8 392,920 + MIT1002_00364 0.47 -0.0 392,933 - MIT1002_00364 0.48 -0.5 392,967 + MIT1002_00364 0.51 -0.8 393,015 - MIT1002_00364 0.55 +2.3 393,020 + MIT1002_00364 0.56 +0.4 393,020 + MIT1002_00364 0.56 +1.0 393,020 + MIT1002_00364 0.56 +0.4 393,028 - MIT1002_00364 0.56 +0.9 393,039 - MIT1002_00364 0.57 -0.5 393,054 + MIT1002_00364 0.59 -1.2 393,081 - MIT1002_00364 0.61 +2.0 393,086 - MIT1002_00364 0.61 +0.3 393,091 - MIT1002_00364 0.62 -2.2 393,138 + MIT1002_00364 0.66 -1.0 393,146 - MIT1002_00364 0.67 +0.3 393,146 - MIT1002_00364 0.67 -1.2 393,146 - MIT1002_00364 0.67 +1.9 393,148 + MIT1002_00364 0.67 -0.8 393,184 + MIT1002_00364 0.70 -2.4 393,201 - MIT1002_00364 0.71 -2.2 393,222 - MIT1002_00364 0.73 +0.3 393,236 + MIT1002_00364 0.74 -0.7 393,241 + MIT1002_00364 0.75 -0.6 393,249 - MIT1002_00364 0.75 +2.1 393,261 + MIT1002_00364 0.77 -1.8 393,261 + MIT1002_00364 0.77 -0.7 393,261 + MIT1002_00364 0.77 -0.4 393,261 + MIT1002_00364 0.77 -0.7 393,261 + MIT1002_00364 0.77 +0.7 393,261 + MIT1002_00364 0.77 +0.2 393,269 - MIT1002_00364 0.77 +0.1 393,269 - MIT1002_00364 0.77 -0.0 393,284 - MIT1002_00364 0.79 +2.0 393,291 + MIT1002_00364 0.79 +0.6 393,294 - MIT1002_00364 0.79 +1.1 393,294 - MIT1002_00364 0.79 +0.9 393,294 - MIT1002_00364 0.79 +0.1 393,314 + MIT1002_00364 0.81 +0.4 393,314 + MIT1002_00364 0.81 -1.8 393,339 + MIT1002_00364 0.83 +0.5 393,412 + MIT1002_00364 0.90 -0.7 393,613 + -0.5 393,626 - -0.6 393,676 - MIT1002_00365 0.10 -0.2 393,683 + MIT1002_00365 0.11 -0.0 393,712 - MIT1002_00365 0.13 +0.2 393,718 - MIT1002_00365 0.14 +1.5 393,827 - MIT1002_00365 0.24 +0.3 393,840 + MIT1002_00365 0.25 +0.9 393,880 - MIT1002_00365 0.29 -0.4 393,886 + MIT1002_00365 0.30 +0.0 393,894 - MIT1002_00365 0.31 -3.0 393,894 - MIT1002_00365 0.31 -0.7 393,933 + MIT1002_00365 0.34 +0.4 393,933 + MIT1002_00365 0.34 -0.5 393,941 - MIT1002_00365 0.35 -0.9 394,014 + MIT1002_00365 0.42 -1.8 394,150 + MIT1002_00365 0.54 -0.2 394,153 - MIT1002_00365 0.55 -1.4 394,158 - MIT1002_00365 0.55 -0.7 394,189 + MIT1002_00365 0.58 -4.2 394,259 + MIT1002_00365 0.65 +0.7 394,299 + MIT1002_00365 0.68 -1.3 394,424 - MIT1002_00365 0.80 -0.9 394,436 + MIT1002_00365 0.81 +0.4 394,444 - MIT1002_00365 0.82 -1.7 394,444 - MIT1002_00365 0.82 +0.4 394,449 - MIT1002_00365 0.82 -1.3 394,458 + MIT1002_00365 0.83 -0.7 394,468 + MIT1002_00365 0.84 -1.8 394,468 + MIT1002_00365 0.84 -1.8 394,468 + MIT1002_00365 0.84 -0.8 394,472 - MIT1002_00365 0.85 +0.1 394,476 - MIT1002_00365 0.85 +1.3 394,476 - MIT1002_00365 0.85 -0.4 394,476 - MIT1002_00365 0.85 -1.4 394,476 - MIT1002_00365 0.85 -0.1 394,476 - MIT1002_00365 0.85 -0.6 394,476 - MIT1002_00365 0.85 +0.3 394,476 - MIT1002_00365 0.85 +1.1 394,487 + MIT1002_00365 0.86 -0.5 394,487 + MIT1002_00365 0.86 +1.4 394,495 - MIT1002_00365 0.87 -0.8 394,508 + MIT1002_00365 0.88 -0.8 394,508 + MIT1002_00365 0.88 +0.3 394,508 + MIT1002_00365 0.88 -1.1 394,508 + MIT1002_00365 0.88 +1.0 394,508 + MIT1002_00365 0.88 -0.4 394,508 + MIT1002_00365 0.88 -0.3 394,508 + MIT1002_00365 0.88 +0.6 394,508 + MIT1002_00365 0.88 +0.1 394,516 - MIT1002_00365 0.89 -0.9 394,559 + +0.6 394,590 - +0.7 394,590 - +0.6 394,596 - +0.0 394,668 + +0.6 394,669 + +0.3 394,669 + -0.3 394,669 + +0.9 394,698 - +0.1 394,784 + MIT1002_00366 0.10 +0.6 394,785 - MIT1002_00366 0.10 -0.1 394,794 + MIT1002_00366 0.11 +0.6 394,802 - MIT1002_00366 0.11 -1.5 394,802 - MIT1002_00366 0.11 +0.9 394,802 - MIT1002_00366 0.11 -2.7 394,830 - MIT1002_00366 0.14 -0.6 394,891 - MIT1002_00366 0.19 -0.4 394,910 - MIT1002_00366 0.20 -0.1 394,915 - MIT1002_00366 0.21 -0.1 394,920 - MIT1002_00366 0.21 +0.7 394,920 - MIT1002_00366 0.21 +1.1 394,939 + MIT1002_00366 0.23 -1.4 394,994 + MIT1002_00366 0.27 -0.9 394,999 + MIT1002_00366 0.28 -0.1 395,002 - MIT1002_00366 0.28 +0.1 395,002 - MIT1002_00366 0.28 +0.6 395,007 - MIT1002_00366 0.28 +1.0 395,007 - MIT1002_00366 0.28 -0.7 395,029 + MIT1002_00366 0.30 -0.5 395,037 - MIT1002_00366 0.31 -0.4 395,037 - MIT1002_00366 0.31 -0.3 395,094 - MIT1002_00366 0.35 -0.4 395,126 + MIT1002_00366 0.38 -0.9 395,165 + MIT1002_00366 0.41 -1.1 395,170 + MIT1002_00366 0.42 +0.4 395,178 - MIT1002_00366 0.42 -1.5 395,178 - MIT1002_00366 0.42 -2.6 395,200 + MIT1002_00366 0.44 +0.6 395,200 + MIT1002_00366 0.44 -0.3 395,210 + MIT1002_00366 0.45 -1.3 395,275 + MIT1002_00366 0.50 -1.1 395,328 - MIT1002_00366 0.55 +1.9 395,495 + MIT1002_00366 0.68 +5.3 395,503 - MIT1002_00366 0.69 +0.3 395,503 - MIT1002_00366 0.69 -0.6 395,503 - MIT1002_00366 0.69 -1.0 395,559 + MIT1002_00366 0.74 -0.5 395,604 - MIT1002_00366 0.77 +0.2
Or see this region's nucleotide sequence