Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00354

Experiment: monoculture; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00353 and MIT1002_00354 are separated by 70 nucleotidesMIT1002_00354 and MIT1002_00355 are separated by 157 nucleotides MIT1002_00353: MIT1002_00353 - Cytoplasmic trehalase, at 379,278 to 380,801 _00353 MIT1002_00354: MIT1002_00354 - Diguanylate cyclase DosC, at 380,872 to 382,671 _00354 MIT1002_00355: MIT1002_00355 - putative permease, DMT superfamily, at 382,829 to 383,722 _00355 Position (kb) 380 381 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 380.004 kb on + strand, within MIT1002_00353at 380.079 kb on - strand, within MIT1002_00353at 380.081 kb on - strand, within MIT1002_00353at 380.136 kb on + strand, within MIT1002_00353at 380.144 kb on - strand, within MIT1002_00353at 380.268 kb on - strand, within MIT1002_00353at 380.268 kb on - strand, within MIT1002_00353at 380.270 kb on + strand, within MIT1002_00353at 380.304 kb on + strand, within MIT1002_00353at 380.312 kb on - strand, within MIT1002_00353at 380.472 kb on - strand, within MIT1002_00353at 380.500 kb on + strand, within MIT1002_00353at 380.531 kb on + strand, within MIT1002_00353at 380.546 kb on + strand, within MIT1002_00353at 380.583 kb on - strand, within MIT1002_00353at 380.620 kb on + strand, within MIT1002_00353at 380.747 kb on - strandat 380.764 kb on - strandat 380.764 kb on - strandat 380.893 kb on + strandat 380.896 kb on - strandat 380.971 kb on + strandat 380.993 kb on - strandat 381.019 kb on + strandat 381.025 kb on + strandat 381.025 kb on + strandat 381.033 kb on - strandat 381.033 kb on - strandat 381.037 kb on - strandat 381.065 kb on - strand, within MIT1002_00354at 381.261 kb on - strand, within MIT1002_00354at 381.298 kb on + strand, within MIT1002_00354at 381.308 kb on + strand, within MIT1002_00354at 381.316 kb on - strand, within MIT1002_00354at 381.329 kb on + strand, within MIT1002_00354at 381.366 kb on + strand, within MIT1002_00354at 381.375 kb on + strand, within MIT1002_00354at 381.497 kb on + strand, within MIT1002_00354at 381.497 kb on + strand, within MIT1002_00354at 381.497 kb on + strand, within MIT1002_00354at 381.497 kb on + strand, within MIT1002_00354at 381.505 kb on - strand, within MIT1002_00354at 381.577 kb on - strand, within MIT1002_00354at 381.588 kb on - strand, within MIT1002_00354at 381.597 kb on - strand, within MIT1002_00354at 381.602 kb on - strand, within MIT1002_00354at 381.612 kb on + strand, within MIT1002_00354at 381.612 kb on + strand, within MIT1002_00354at 381.654 kb on - strand, within MIT1002_00354at 381.667 kb on + strand, within MIT1002_00354at 381.672 kb on + strand, within MIT1002_00354at 381.696 kb on + strand, within MIT1002_00354at 381.706 kb on + strand, within MIT1002_00354at 381.706 kb on + strand, within MIT1002_00354at 381.818 kb on - strand, within MIT1002_00354at 381.818 kb on - strand, within MIT1002_00354at 381.856 kb on + strand, within MIT1002_00354at 381.861 kb on + strand, within MIT1002_00354at 381.869 kb on - strand, within MIT1002_00354at 381.956 kb on - strand, within MIT1002_00354at 381.961 kb on + strand, within MIT1002_00354at 381.969 kb on - strand, within MIT1002_00354at 381.972 kb on + strand, within MIT1002_00354at 381.999 kb on + strand, within MIT1002_00354at 381.999 kb on + strand, within MIT1002_00354at 382.000 kb on - strand, within MIT1002_00354at 382.064 kb on + strand, within MIT1002_00354at 382.085 kb on + strand, within MIT1002_00354at 382.151 kb on + strand, within MIT1002_00354at 382.153 kb on - strand, within MIT1002_00354at 382.159 kb on - strand, within MIT1002_00354at 382.159 kb on - strand, within MIT1002_00354at 382.169 kb on - strand, within MIT1002_00354at 382.221 kb on + strand, within MIT1002_00354at 382.262 kb on + strand, within MIT1002_00354at 382.270 kb on - strand, within MIT1002_00354at 382.405 kb on - strand, within MIT1002_00354at 382.442 kb on + strand, within MIT1002_00354at 382.521 kb on - strandat 382.539 kb on + strandat 382.547 kb on - strandat 382.549 kb on + strandat 382.549 kb on + strandat 382.597 kb on - strandat 382.654 kb on + strandat 382.660 kb on + strandat 382.661 kb on - strandat 382.668 kb on - strandat 382.668 kb on - strandat 382.668 kb on - strandat 382.722 kb on + strandat 382.722 kb on + strandat 382.744 kb on - strandat 382.801 kb on + strandat 382.866 kb on + strandat 382.879 kb on - strandat 382.889 kb on + strandat 382.897 kb on - strandat 382.897 kb on - strandat 382.899 kb on - strandat 382.935 kb on + strand, within MIT1002_00355at 382.969 kb on + strand, within MIT1002_00355at 382.970 kb on + strand, within MIT1002_00355at 382.970 kb on + strand, within MIT1002_00355at 382.978 kb on - strand, within MIT1002_00355at 383.123 kb on + strand, within MIT1002_00355at 383.296 kb on + strand, within MIT1002_00355at 383.301 kb on - strand, within MIT1002_00355at 383.317 kb on + strand, within MIT1002_00355at 383.325 kb on + strand, within MIT1002_00355at 383.325 kb on + strand, within MIT1002_00355at 383.339 kb on + strand, within MIT1002_00355at 383.347 kb on - strand, within MIT1002_00355at 383.350 kb on + strand, within MIT1002_00355at 383.355 kb on - strand, within MIT1002_00355at 383.389 kb on - strand, within MIT1002_00355at 383.417 kb on + strand, within MIT1002_00355at 383.423 kb on - strand, within MIT1002_00355at 383.446 kb on + strand, within MIT1002_00355at 383.461 kb on + strand, within MIT1002_00355at 383.577 kb on + strand, within MIT1002_00355at 383.585 kb on - strand, within MIT1002_00355at 383.671 kb on - strandat 383.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 5
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380,004 + MIT1002_00353 0.48 -0.5
380,079 - MIT1002_00353 0.53 +1.0
380,081 - MIT1002_00353 0.53 +0.7
380,136 + MIT1002_00353 0.56 -2.1
380,144 - MIT1002_00353 0.57 +0.2
380,268 - MIT1002_00353 0.65 -2.3
380,268 - MIT1002_00353 0.65 -1.7
380,270 + MIT1002_00353 0.65 +0.6
380,304 + MIT1002_00353 0.67 -1.8
380,312 - MIT1002_00353 0.68 -0.5
380,472 - MIT1002_00353 0.78 +0.6
380,500 + MIT1002_00353 0.80 -1.2
380,531 + MIT1002_00353 0.82 -1.5
380,546 + MIT1002_00353 0.83 -0.1
380,583 - MIT1002_00353 0.86 -1.4
380,620 + MIT1002_00353 0.88 -0.1
380,747 - +0.9
380,764 - -0.2
380,764 - -0.2
380,893 + +0.5
380,896 - -0.1
380,971 + +0.2
380,993 - +0.5
381,019 + +0.0
381,025 + +0.4
381,025 + +0.5
381,033 - +0.6
381,033 - +0.7
381,037 - -0.1
381,065 - MIT1002_00354 0.11 +0.3
381,261 - MIT1002_00354 0.22 -1.0
381,298 + MIT1002_00354 0.24 +1.0
381,308 + MIT1002_00354 0.24 -0.3
381,316 - MIT1002_00354 0.25 +1.0
381,329 + MIT1002_00354 0.25 +1.1
381,366 + MIT1002_00354 0.27 +0.6
381,375 + MIT1002_00354 0.28 -0.0
381,497 + MIT1002_00354 0.35 +1.7
381,497 + MIT1002_00354 0.35 +0.3
381,497 + MIT1002_00354 0.35 -0.1
381,497 + MIT1002_00354 0.35 -0.5
381,505 - MIT1002_00354 0.35 +0.6
381,577 - MIT1002_00354 0.39 -0.4
381,588 - MIT1002_00354 0.40 +0.5
381,597 - MIT1002_00354 0.40 -0.5
381,602 - MIT1002_00354 0.41 -0.4
381,612 + MIT1002_00354 0.41 +0.5
381,612 + MIT1002_00354 0.41 -0.6
381,654 - MIT1002_00354 0.43 -0.7
381,667 + MIT1002_00354 0.44 +0.7
381,672 + MIT1002_00354 0.44 -1.1
381,696 + MIT1002_00354 0.46 +0.6
381,706 + MIT1002_00354 0.46 +1.2
381,706 + MIT1002_00354 0.46 +0.4
381,818 - MIT1002_00354 0.53 +1.3
381,818 - MIT1002_00354 0.53 +2.0
381,856 + MIT1002_00354 0.55 -0.8
381,861 + MIT1002_00354 0.55 -1.4
381,869 - MIT1002_00354 0.55 -0.9
381,956 - MIT1002_00354 0.60 -1.0
381,961 + MIT1002_00354 0.60 -0.4
381,969 - MIT1002_00354 0.61 -2.3
381,972 + MIT1002_00354 0.61 -1.4
381,999 + MIT1002_00354 0.63 +1.3
381,999 + MIT1002_00354 0.63 -0.7
382,000 - MIT1002_00354 0.63 +0.3
382,064 + MIT1002_00354 0.66 +0.5
382,085 + MIT1002_00354 0.67 +0.1
382,151 + MIT1002_00354 0.71 +1.6
382,153 - MIT1002_00354 0.71 +0.3
382,159 - MIT1002_00354 0.71 +2.1
382,159 - MIT1002_00354 0.71 +0.4
382,169 - MIT1002_00354 0.72 -0.5
382,221 + MIT1002_00354 0.75 +1.0
382,262 + MIT1002_00354 0.77 +0.4
382,270 - MIT1002_00354 0.78 -0.4
382,405 - MIT1002_00354 0.85 -0.8
382,442 + MIT1002_00354 0.87 +1.0
382,521 - -2.1
382,539 + -0.3
382,547 - -0.9
382,549 + +0.4
382,549 + +0.5
382,597 - -0.5
382,654 + +1.1
382,660 + +0.5
382,661 - -0.4
382,668 - -0.7
382,668 - +0.1
382,668 - +1.1
382,722 + +1.2
382,722 + -1.0
382,744 - +0.7
382,801 + +0.5
382,866 + -0.8
382,879 - -2.8
382,889 + +1.5
382,897 - -1.3
382,897 - +1.4
382,899 - +1.0
382,935 + MIT1002_00355 0.12 +1.2
382,969 + MIT1002_00355 0.16 -1.9
382,970 + MIT1002_00355 0.16 -0.0
382,970 + MIT1002_00355 0.16 -0.4
382,978 - MIT1002_00355 0.17 +0.4
383,123 + MIT1002_00355 0.33 +0.3
383,296 + MIT1002_00355 0.52 -0.6
383,301 - MIT1002_00355 0.53 -0.5
383,317 + MIT1002_00355 0.55 -1.3
383,325 + MIT1002_00355 0.55 -0.6
383,325 + MIT1002_00355 0.55 -1.3
383,339 + MIT1002_00355 0.57 -0.2
383,347 - MIT1002_00355 0.58 -0.4
383,350 + MIT1002_00355 0.58 -0.2
383,355 - MIT1002_00355 0.59 -1.4
383,389 - MIT1002_00355 0.63 +1.4
383,417 + MIT1002_00355 0.66 -2.0
383,423 - MIT1002_00355 0.66 -2.5
383,446 + MIT1002_00355 0.69 -2.0
383,461 + MIT1002_00355 0.71 -0.4
383,577 + MIT1002_00355 0.84 +0.1
383,585 - MIT1002_00355 0.85 -1.0
383,671 - -0.3
383,671 - -1.6

Or see this region's nucleotide sequence