Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS44050 and QEN71_RS44055 are separated by 751 nucleotides QEN71_RS44055 and QEN71_RS44060 are separated by 12 nucleotides QEN71_RS44060 and QEN71_RS44065 are separated by 56 nucleotides
QEN71_RS44050: QEN71_RS44050 - CAP domain-containing protein, at 282,592 to 283,671
_RS44050
QEN71_RS44055: QEN71_RS44055 - hypothetical protein, at 284,423 to 285,643
_RS44055
QEN71_RS44060: QEN71_RS44060 - type 4 pilus major pilin, at 285,656 to 286,249
_RS44060
QEN71_RS44065: QEN71_RS44065 - type II secretion system protein, at 286,306 to 287,424
_RS44065
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 283.456 kb on - strand, within QEN71_RS44050 at 283.473 kb on + strand, within QEN71_RS44050 at 283.473 kb on + strand, within QEN71_RS44050 at 283.473 kb on + strand, within QEN71_RS44050 at 283.474 kb on - strand, within QEN71_RS44050 at 283.474 kb on - strand, within QEN71_RS44050 at 283.474 kb on - strand, within QEN71_RS44050 at 283.474 kb on - strand, within QEN71_RS44050 at 283.474 kb on - strand, within QEN71_RS44050 at 283.587 kb on + strand at 283.588 kb on - strand at 283.588 kb on - strand at 283.594 kb on + strand at 283.594 kb on + strand at 283.595 kb on - strand at 283.595 kb on - strand at 283.595 kb on - strand at 283.654 kb on - strand at 283.654 kb on - strand at 283.670 kb on - strand at 283.670 kb on - strand at 283.683 kb on - strand at 283.799 kb on + strand at 283.799 kb on + strand at 283.799 kb on + strand at 283.800 kb on - strand at 283.800 kb on - strand at 283.813 kb on + strand at 283.813 kb on + strand at 283.813 kb on + strand at 283.814 kb on - strand at 283.814 kb on - strand at 283.814 kb on - strand at 283.814 kb on - strand at 283.814 kb on - strand at 283.852 kb on + strand at 283.852 kb on + strand at 283.853 kb on - strand at 283.882 kb on + strand at 283.882 kb on + strand at 283.882 kb on + strand at 283.883 kb on - strand at 283.883 kb on - strand at 283.900 kb on + strand at 283.900 kb on + strand at 283.900 kb on + strand at 283.901 kb on - strand at 283.901 kb on - strand at 283.909 kb on + strand at 283.909 kb on + strand at 283.909 kb on + strand at 283.909 kb on + strand at 283.909 kb on + strand at 283.910 kb on - strand at 283.910 kb on - strand at 283.910 kb on - strand at 283.910 kb on - strand at 283.910 kb on - strand at 283.910 kb on - strand at 283.911 kb on + strand at 283.912 kb on - strand at 283.928 kb on - strand at 283.934 kb on + strand at 283.935 kb on - strand at 284.088 kb on + strand at 284.089 kb on - strand at 284.130 kb on - strand at 284.130 kb on - strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.132 kb on - strand at 284.132 kb on - strand at 284.161 kb on + strand at 284.161 kb on + strand at 284.162 kb on - strand at 284.162 kb on - strand at 284.162 kb on - strand at 284.162 kb on - strand at 284.165 kb on + strand at 284.165 kb on + strand at 284.165 kb on + strand at 284.166 kb on - strand at 284.166 kb on - strand at 284.166 kb on - strand at 284.166 kb on - strand at 284.267 kb on + strand at 284.268 kb on - strand at 284.314 kb on - strand at 284.314 kb on - strand at 284.370 kb on - strand at 284.370 kb on - strand at 284.370 kb on - strand at 284.378 kb on + strand at 284.424 kb on + strand at 284.424 kb on + strand at 284.425 kb on - strand at 284.425 kb on - strand at 284.427 kb on + strand at 284.427 kb on + strand at 284.436 kb on + strand at 284.444 kb on + strand at 284.445 kb on - strand at 284.445 kb on - strand at 284.487 kb on + strand at 284.487 kb on + strand at 284.487 kb on + strand at 284.487 kb on + strand at 284.488 kb on - strand at 284.488 kb on - strand at 284.488 kb on - strand at 284.488 kb on - strand at 284.488 kb on - strand at 284.488 kb on - strand at 284.489 kb on + strand at 284.489 kb on + strand at 284.489 kb on + strand at 284.490 kb on - strand at 284.490 kb on - strand at 284.490 kb on - strand at 284.580 kb on - strand, within QEN71_RS44055 at 284.580 kb on - strand, within QEN71_RS44055 at 284.580 kb on - strand, within QEN71_RS44055 at 284.580 kb on - strand, within QEN71_RS44055 at 284.633 kb on + strand, within QEN71_RS44055 at 284.633 kb on + strand, within QEN71_RS44055 at 284.633 kb on + strand, within QEN71_RS44055 at 284.633 kb on + strand, within QEN71_RS44055 at 284.633 kb on + strand, within QEN71_RS44055 at 284.634 kb on - strand, within QEN71_RS44055 at 284.634 kb on - strand, within QEN71_RS44055 at 284.634 kb on - strand, within QEN71_RS44055 at 284.634 kb on - strand, within QEN71_RS44055 at 284.634 kb on - strand, within QEN71_RS44055 at 284.634 kb on - strand, within QEN71_RS44055 at 284.646 kb on + strand, within QEN71_RS44055 at 284.647 kb on - strand, within QEN71_RS44055 at 284.647 kb on - strand, within QEN71_RS44055 at 284.662 kb on + strand, within QEN71_RS44055 at 284.691 kb on + strand, within QEN71_RS44055 at 284.691 kb on + strand, within QEN71_RS44055 at 284.737 kb on + strand, within QEN71_RS44055 at 284.737 kb on + strand, within QEN71_RS44055 at 284.737 kb on + strand, within QEN71_RS44055 at 284.738 kb on - strand, within QEN71_RS44055 at 284.738 kb on - strand, within QEN71_RS44055 at 284.738 kb on - strand, within QEN71_RS44055 at 284.738 kb on - strand, within QEN71_RS44055 at 284.786 kb on + strand, within QEN71_RS44055 at 284.809 kb on + strand, within QEN71_RS44055 at 284.810 kb on - strand, within QEN71_RS44055 at 284.874 kb on + strand, within QEN71_RS44055 at 284.874 kb on + strand, within QEN71_RS44055 at 284.874 kb on + strand, within QEN71_RS44055 at 284.874 kb on + strand, within QEN71_RS44055 at 284.874 kb on + strand, within QEN71_RS44055 at 284.874 kb on + strand, within QEN71_RS44055 at 284.874 kb on + strand, within QEN71_RS44055 at 284.875 kb on - strand, within QEN71_RS44055 at 284.875 kb on - strand, within QEN71_RS44055 at 284.875 kb on - strand, within QEN71_RS44055 at 285.039 kb on + strand, within QEN71_RS44055 at 285.039 kb on + strand, within QEN71_RS44055 at 285.039 kb on + strand, within QEN71_RS44055 at 285.040 kb on - strand, within QEN71_RS44055 at 285.040 kb on - strand, within QEN71_RS44055 at 285.040 kb on - strand, within QEN71_RS44055 at 285.040 kb on - strand, within QEN71_RS44055 at 285.040 kb on - strand, within QEN71_RS44055 at 285.040 kb on - strand, within QEN71_RS44055 at 285.168 kb on + strand, within QEN71_RS44055 at 285.270 kb on + strand, within QEN71_RS44055 at 285.277 kb on + strand, within QEN71_RS44055 at 285.278 kb on - strand, within QEN71_RS44055 at 285.335 kb on - strand, within QEN71_RS44055 at 285.335 kb on - strand, within QEN71_RS44055 at 285.345 kb on + strand, within QEN71_RS44055 at 285.345 kb on + strand, within QEN71_RS44055 at 285.385 kb on + strand, within QEN71_RS44055 at 285.457 kb on - strand, within QEN71_RS44055 at 285.457 kb on - strand, within QEN71_RS44055 at 285.559 kb on + strand at 285.672 kb on + strand at 285.673 kb on - strand at 285.690 kb on + strand at 285.787 kb on - strand, within QEN71_RS44060 at 285.840 kb on + strand, within QEN71_RS44060 at 285.841 kb on - strand, within QEN71_RS44060 at 286.040 kb on - strand, within QEN71_RS44060 at 286.090 kb on - strand, within QEN71_RS44060 at 286.096 kb on - strand, within QEN71_RS44060 at 286.096 kb on - strand, within QEN71_RS44060 at 286.096 kb on - strand, within QEN71_RS44060 at 286.146 kb on + strand, within QEN71_RS44060 at 286.146 kb on + strand, within QEN71_RS44060 at 286.146 kb on + strand, within QEN71_RS44060 at 286.146 kb on + strand, within QEN71_RS44060 at 286.146 kb on + strand, within QEN71_RS44060 at 286.147 kb on - strand, within QEN71_RS44060 at 286.147 kb on - strand, within QEN71_RS44060 at 286.147 kb on - strand, within QEN71_RS44060 at 286.147 kb on - strand, within QEN71_RS44060 at 286.147 kb on - strand, within QEN71_RS44060 at 286.261 kb on - strand at 286.261 kb on - strand at 286.294 kb on - strand at 286.364 kb on + strand at 286.365 kb on - strand at 286.365 kb on - strand at 286.384 kb on + strand at 286.384 kb on + strand at 286.385 kb on - strand at 286.385 kb on - strand at 286.418 kb on + strand, within QEN71_RS44065 at 286.528 kb on - strand, within QEN71_RS44065 at 286.537 kb on + strand, within QEN71_RS44065 at 286.600 kb on + strand, within QEN71_RS44065 at 286.601 kb on - strand, within QEN71_RS44065
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 283,456 - QEN71_RS44050 0.80 -2.1 283,473 + QEN71_RS44050 0.82 +0.2 283,473 + QEN71_RS44050 0.82 -1.1 283,473 + QEN71_RS44050 0.82 +0.2 283,474 - QEN71_RS44050 0.82 +0.0 283,474 - QEN71_RS44050 0.82 -0.3 283,474 - QEN71_RS44050 0.82 +0.6 283,474 - QEN71_RS44050 0.82 +0.6 283,474 - QEN71_RS44050 0.82 +0.0 283,587 + -0.8 283,588 - -0.7 283,588 - +0.9 283,594 + -1.6 283,594 + -1.7 283,595 - -0.3 283,595 - -1.1 283,595 - +0.2 283,654 - -0.3 283,654 - -0.4 283,670 - +0.1 283,670 - +2.0 283,683 - -1.3 283,799 + -1.1 283,799 + +1.2 283,799 + +1.9 283,800 - -1.5 283,800 - +0.6 283,813 + +0.2 283,813 + -0.6 283,813 + +0.5 283,814 - +0.6 283,814 - -0.0 283,814 - +0.3 283,814 - +0.0 283,814 - -0.0 283,852 + +3.2 283,852 + -0.3 283,853 - +0.6 283,882 + +0.4 283,882 + -1.0 283,882 + +0.6 283,883 - -0.1 283,883 - -1.7 283,900 + -0.1 283,900 + +2.0 283,900 + -1.0 283,901 - +0.6 283,901 - -2.0 283,909 + -0.1 283,909 + -0.2 283,909 + -2.8 283,909 + +1.0 283,909 + +0.9 283,910 - -0.5 283,910 - +1.0 283,910 - +0.8 283,910 - -0.4 283,910 - -0.3 283,910 - -0.7 283,911 + +0.5 283,912 - -1.3 283,928 - -0.9 283,934 + -1.2 283,935 - +0.7 284,088 + -0.2 284,089 - -0.4 284,130 - -0.5 284,130 - +0.4 284,131 + -0.2 284,131 + +0.0 284,131 + +0.3 284,131 + -0.4 284,132 - +0.9 284,132 - -0.5 284,161 + -0.9 284,161 + +2.2 284,162 - +0.0 284,162 - +1.0 284,162 - -0.4 284,162 - -0.8 284,165 + +1.2 284,165 + +0.5 284,165 + -1.0 284,166 - -0.3 284,166 - +2.4 284,166 - +0.5 284,166 - -0.3 284,267 + -2.5 284,268 - -1.3 284,314 - +0.8 284,314 - -0.3 284,370 - +1.2 284,370 - -1.1 284,370 - +1.6 284,378 + +1.0 284,424 + -0.1 284,424 + -0.4 284,425 - -0.5 284,425 - +0.4 284,427 + -1.4 284,427 + -0.5 284,436 + +0.2 284,444 + +0.6 284,445 - +0.5 284,445 - -0.3 284,487 + +0.1 284,487 + -0.5 284,487 + -1.4 284,487 + +0.0 284,488 - -0.1 284,488 - -1.1 284,488 - -0.4 284,488 - +0.0 284,488 - +1.0 284,488 - -0.7 284,489 + +0.2 284,489 + -1.1 284,489 + +0.2 284,490 - -1.4 284,490 - +1.0 284,490 - +0.0 284,580 - QEN71_RS44055 0.13 +0.0 284,580 - QEN71_RS44055 0.13 -0.3 284,580 - QEN71_RS44055 0.13 +1.5 284,580 - QEN71_RS44055 0.13 -2.2 284,633 + QEN71_RS44055 0.17 -1.2 284,633 + QEN71_RS44055 0.17 -1.0 284,633 + QEN71_RS44055 0.17 -1.3 284,633 + QEN71_RS44055 0.17 -0.5 284,633 + QEN71_RS44055 0.17 -1.0 284,634 - QEN71_RS44055 0.17 +0.0 284,634 - QEN71_RS44055 0.17 +0.0 284,634 - QEN71_RS44055 0.17 -1.5 284,634 - QEN71_RS44055 0.17 +1.0 284,634 - QEN71_RS44055 0.17 +0.4 284,634 - QEN71_RS44055 0.17 -1.5 284,646 + QEN71_RS44055 0.18 +1.3 284,647 - QEN71_RS44055 0.18 -0.7 284,647 - QEN71_RS44055 0.18 +1.0 284,662 + QEN71_RS44055 0.20 -0.4 284,691 + QEN71_RS44055 0.22 -1.5 284,691 + QEN71_RS44055 0.22 -0.6 284,737 + QEN71_RS44055 0.26 +1.5 284,737 + QEN71_RS44055 0.26 -0.0 284,737 + QEN71_RS44055 0.26 +0.5 284,738 - QEN71_RS44055 0.26 -1.0 284,738 - QEN71_RS44055 0.26 +0.8 284,738 - QEN71_RS44055 0.26 -1.1 284,738 - QEN71_RS44055 0.26 -0.1 284,786 + QEN71_RS44055 0.30 -1.0 284,809 + QEN71_RS44055 0.32 -0.8 284,810 - QEN71_RS44055 0.32 -0.2 284,874 + QEN71_RS44055 0.37 +1.3 284,874 + QEN71_RS44055 0.37 -0.1 284,874 + QEN71_RS44055 0.37 -1.1 284,874 + QEN71_RS44055 0.37 -2.1 284,874 + QEN71_RS44055 0.37 -0.2 284,874 + QEN71_RS44055 0.37 -1.1 284,874 + QEN71_RS44055 0.37 +3.3 284,875 - QEN71_RS44055 0.37 -1.3 284,875 - QEN71_RS44055 0.37 -0.8 284,875 - QEN71_RS44055 0.37 -1.4 285,039 + QEN71_RS44055 0.50 -2.4 285,039 + QEN71_RS44055 0.50 -1.5 285,039 + QEN71_RS44055 0.50 -0.8 285,040 - QEN71_RS44055 0.51 -1.2 285,040 - QEN71_RS44055 0.51 -0.4 285,040 - QEN71_RS44055 0.51 -0.5 285,040 - QEN71_RS44055 0.51 -0.6 285,040 - QEN71_RS44055 0.51 -0.1 285,040 - QEN71_RS44055 0.51 +0.2 285,168 + QEN71_RS44055 0.61 +0.6 285,270 + QEN71_RS44055 0.69 -0.7 285,277 + QEN71_RS44055 0.70 +0.5 285,278 - QEN71_RS44055 0.70 +0.8 285,335 - QEN71_RS44055 0.75 -0.1 285,335 - QEN71_RS44055 0.75 -0.2 285,345 + QEN71_RS44055 0.76 -0.2 285,345 + QEN71_RS44055 0.76 -0.6 285,385 + QEN71_RS44055 0.79 -1.9 285,457 - QEN71_RS44055 0.85 -1.5 285,457 - QEN71_RS44055 0.85 -1.5 285,559 + +0.1 285,672 + -0.4 285,673 - -0.9 285,690 + -2.2 285,787 - QEN71_RS44060 0.22 +0.4 285,840 + QEN71_RS44060 0.31 -1.3 285,841 - QEN71_RS44060 0.31 +1.6 286,040 - QEN71_RS44060 0.65 +2.5 286,090 - QEN71_RS44060 0.73 +1.0 286,096 - QEN71_RS44060 0.74 -0.5 286,096 - QEN71_RS44060 0.74 -0.8 286,096 - QEN71_RS44060 0.74 -0.0 286,146 + QEN71_RS44060 0.82 +0.2 286,146 + QEN71_RS44060 0.82 -1.1 286,146 + QEN71_RS44060 0.82 +0.7 286,146 + QEN71_RS44060 0.82 -1.8 286,146 + QEN71_RS44060 0.82 +0.9 286,147 - QEN71_RS44060 0.83 +0.0 286,147 - QEN71_RS44060 0.83 -1.0 286,147 - QEN71_RS44060 0.83 -1.9 286,147 - QEN71_RS44060 0.83 +0.5 286,147 - QEN71_RS44060 0.83 +0.6 286,261 - -1.1 286,261 - -0.3 286,294 - -1.4 286,364 + -0.1 286,365 - -1.3 286,365 - -0.3 286,384 + +0.3 286,384 + -0.7 286,385 - +0.0 286,385 - +0.0 286,418 + QEN71_RS44065 0.10 -1.1 286,528 - QEN71_RS44065 0.20 -2.7 286,537 + QEN71_RS44065 0.21 -0.3 286,600 + QEN71_RS44065 0.26 -0.4 286,601 - QEN71_RS44065 0.26 +1.0
Or see this region's nucleotide sequence