Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS40865 and QEN71_RS40870 are separated by 185 nucleotides QEN71_RS40870 and QEN71_RS40875 are separated by 10 nucleotides QEN71_RS40875 and QEN71_RS40880 overlap by 1 nucleotides
QEN71_RS40865: QEN71_RS40865 - ATP-binding protein, at 237,688 to 238,653
_RS40865
QEN71_RS40870: QEN71_RS40870 - TrbM/KikA/MpfK family conjugal transfer protein, at 238,839 to 239,165
_RS40870
QEN71_RS40875: QEN71_RS40875 - hypothetical protein, at 239,176 to 239,625
_RS40875
QEN71_RS40880: QEN71_RS40880 - StbB family protein, at 239,625 to 240,335
_RS40880
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 237.967 kb on + strand, within QEN71_RS40865 at 238.016 kb on + strand, within QEN71_RS40865 at 238.016 kb on + strand, within QEN71_RS40865 at 238.016 kb on + strand, within QEN71_RS40865 at 238.239 kb on - strand, within QEN71_RS40865 at 238.367 kb on + strand, within QEN71_RS40865 at 238.368 kb on - strand, within QEN71_RS40865 at 238.446 kb on - strand, within QEN71_RS40865 at 238.541 kb on + strand, within QEN71_RS40865 at 238.541 kb on + strand, within QEN71_RS40865 at 238.542 kb on - strand, within QEN71_RS40865 at 238.542 kb on - strand, within QEN71_RS40865 at 238.652 kb on - strand at 238.704 kb on - strand at 238.769 kb on - strand at 238.864 kb on + strand at 239.003 kb on - strand, within QEN71_RS40870 at 239.116 kb on - strand, within QEN71_RS40870 at 239.177 kb on + strand at 239.178 kb on - strand at 239.348 kb on + strand, within QEN71_RS40875 at 239.460 kb on - strand, within QEN71_RS40875 at 239.709 kb on - strand, within QEN71_RS40880 at 239.709 kb on - strand, within QEN71_RS40880 at 239.767 kb on + strand, within QEN71_RS40880 at 239.768 kb on - strand, within QEN71_RS40880 at 239.942 kb on + strand, within QEN71_RS40880 at 240.082 kb on + strand, within QEN71_RS40880 at 240.083 kb on - strand, within QEN71_RS40880
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 237,967 + QEN71_RS40865 0.29 +1.7 238,016 + QEN71_RS40865 0.34 -0.2 238,016 + QEN71_RS40865 0.34 +1.5 238,016 + QEN71_RS40865 0.34 +1.3 238,239 - QEN71_RS40865 0.57 -1.2 238,367 + QEN71_RS40865 0.70 -0.6 238,368 - QEN71_RS40865 0.70 +0.2 238,446 - QEN71_RS40865 0.78 -2.2 238,541 + QEN71_RS40865 0.88 -0.2 238,541 + QEN71_RS40865 0.88 +1.6 238,542 - QEN71_RS40865 0.88 +0.3 238,542 - QEN71_RS40865 0.88 -1.4 238,652 - +0.5 238,704 - +0.6 238,769 - +0.4 238,864 + -0.4 239,003 - QEN71_RS40870 0.50 -0.7 239,116 - QEN71_RS40870 0.85 +0.2 239,177 + -0.7 239,178 - +0.3 239,348 + QEN71_RS40875 0.38 -0.6 239,460 - QEN71_RS40875 0.63 -0.2 239,709 - QEN71_RS40880 0.12 -0.1 239,709 - QEN71_RS40880 0.12 -0.4 239,767 + QEN71_RS40880 0.20 +1.3 239,768 - QEN71_RS40880 0.20 +2.0 239,942 + QEN71_RS40880 0.45 +2.7 240,082 + QEN71_RS40880 0.64 -0.6 240,083 - QEN71_RS40880 0.64 -1.2
Or see this region's nucleotide sequence