Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS40845 and QEN71_RS40850 are separated by 772 nucleotides QEN71_RS40850 and QEN71_RS40855 are separated by 381 nucleotides QEN71_RS40855 and QEN71_RS40860 are separated by 0 nucleotides
QEN71_RS40845: QEN71_RS40845 - IS21-like element helper ATPase IstB, at 232,885 to 233,718
_RS40845
QEN71_RS40850: QEN71_RS40850 - tetratricopeptide repeat protein, at 234,491 to 236,440
_RS40850
QEN71_RS40855: QEN71_RS40855 - hypothetical protein, at 236,822 to 237,385
_RS40855
QEN71_RS40860: QEN71_RS40860 - histidine kinase dimerization/phospho-acceptor domain-containing protein, at 237,386 to 237,733
_RS40860
Position (kb) 234
235
236
237 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.493 kb on - strand, within QEN71_RS40845 at 233.611 kb on + strand, within QEN71_RS40845 at 233.612 kb on - strand, within QEN71_RS40845 at 233.661 kb on - strand at 233.679 kb on + strand at 233.717 kb on - strand at 233.733 kb on + strand at 233.733 kb on + strand at 233.733 kb on + strand at 233.742 kb on - strand at 233.742 kb on - strand at 233.755 kb on + strand at 233.755 kb on + strand at 233.756 kb on - strand at 233.756 kb on - strand at 233.756 kb on - strand at 233.771 kb on + strand at 233.771 kb on + strand at 233.772 kb on - strand at 233.772 kb on - strand at 233.772 kb on - strand at 233.772 kb on - strand at 233.775 kb on + strand at 233.776 kb on - strand at 233.776 kb on - strand at 233.776 kb on - strand at 233.776 kb on - strand at 233.776 kb on - strand at 233.776 kb on - strand at 233.776 kb on - strand at 233.776 kb on - strand at 233.776 kb on - strand at 233.786 kb on - strand at 233.821 kb on - strand at 233.821 kb on - strand at 233.821 kb on - strand at 233.821 kb on - strand at 233.821 kb on - strand at 233.821 kb on - strand at 233.821 kb on - strand at 233.821 kb on - strand at 233.857 kb on + strand at 233.857 kb on + strand at 233.933 kb on + strand at 233.933 kb on + strand at 233.933 kb on + strand at 233.933 kb on + strand at 233.933 kb on + strand at 233.933 kb on + strand at 233.933 kb on + strand at 233.933 kb on + strand at 233.933 kb on + strand at 233.934 kb on - strand at 233.934 kb on - strand at 233.934 kb on - strand at 233.934 kb on - strand at 233.934 kb on - strand at 233.934 kb on - strand at 233.934 kb on - strand at 233.934 kb on - strand at 233.934 kb on - strand at 233.934 kb on - strand at 234.000 kb on - strand at 234.038 kb on + strand at 234.039 kb on - strand at 234.039 kb on - strand at 234.047 kb on + strand at 234.158 kb on - strand at 234.185 kb on - strand at 234.255 kb on + strand at 234.255 kb on + strand at 234.255 kb on + strand at 234.256 kb on - strand at 234.256 kb on - strand at 234.256 kb on - strand at 234.256 kb on - strand at 234.256 kb on - strand at 234.256 kb on - strand at 234.260 kb on - strand at 234.295 kb on - strand at 234.295 kb on - strand at 234.352 kb on + strand at 234.352 kb on + strand at 234.352 kb on + strand at 234.353 kb on - strand at 234.489 kb on + strand at 234.490 kb on - strand at 234.545 kb on + strand at 234.545 kb on + strand at 234.545 kb on + strand at 234.545 kb on + strand at 234.545 kb on + strand at 234.545 kb on + strand at 234.546 kb on - strand at 234.546 kb on - strand at 234.546 kb on - strand at 234.546 kb on - strand at 234.546 kb on - strand at 234.546 kb on - strand at 234.546 kb on - strand at 234.546 kb on - strand at 234.638 kb on - strand at 234.709 kb on - strand, within QEN71_RS40850 at 234.748 kb on - strand, within QEN71_RS40850 at 234.748 kb on - strand, within QEN71_RS40850 at 234.873 kb on + strand, within QEN71_RS40850 at 235.035 kb on + strand, within QEN71_RS40850 at 235.035 kb on + strand, within QEN71_RS40850 at 235.035 kb on + strand, within QEN71_RS40850 at 235.035 kb on + strand, within QEN71_RS40850 at 235.036 kb on - strand, within QEN71_RS40850 at 235.036 kb on - strand, within QEN71_RS40850 at 235.036 kb on - strand, within QEN71_RS40850 at 235.071 kb on + strand, within QEN71_RS40850 at 235.071 kb on + strand, within QEN71_RS40850 at 235.095 kb on + strand, within QEN71_RS40850 at 235.095 kb on + strand, within QEN71_RS40850 at 235.131 kb on + strand, within QEN71_RS40850 at 235.131 kb on + strand, within QEN71_RS40850 at 235.132 kb on - strand, within QEN71_RS40850 at 235.132 kb on - strand, within QEN71_RS40850 at 235.132 kb on - strand, within QEN71_RS40850 at 235.132 kb on - strand, within QEN71_RS40850 at 235.132 kb on - strand, within QEN71_RS40850 at 235.389 kb on + strand, within QEN71_RS40850 at 235.389 kb on + strand, within QEN71_RS40850 at 235.390 kb on - strand, within QEN71_RS40850 at 235.397 kb on + strand, within QEN71_RS40850 at 235.419 kb on - strand, within QEN71_RS40850 at 235.471 kb on - strand, within QEN71_RS40850 at 235.471 kb on - strand, within QEN71_RS40850 at 235.647 kb on + strand, within QEN71_RS40850 at 235.647 kb on + strand, within QEN71_RS40850 at 235.647 kb on + strand, within QEN71_RS40850 at 235.647 kb on + strand, within QEN71_RS40850 at 235.648 kb on - strand, within QEN71_RS40850 at 235.751 kb on + strand, within QEN71_RS40850 at 235.751 kb on + strand, within QEN71_RS40850 at 235.751 kb on + strand, within QEN71_RS40850 at 235.751 kb on + strand, within QEN71_RS40850 at 235.752 kb on - strand, within QEN71_RS40850 at 235.752 kb on - strand, within QEN71_RS40850 at 235.752 kb on - strand, within QEN71_RS40850 at 235.756 kb on + strand, within QEN71_RS40850 at 235.757 kb on - strand, within QEN71_RS40850 at 235.770 kb on + strand, within QEN71_RS40850 at 235.770 kb on + strand, within QEN71_RS40850 at 235.770 kb on + strand, within QEN71_RS40850 at 235.770 kb on + strand, within QEN71_RS40850 at 235.770 kb on + strand, within QEN71_RS40850 at 235.770 kb on + strand, within QEN71_RS40850 at 235.770 kb on + strand, within QEN71_RS40850 at 235.770 kb on + strand, within QEN71_RS40850 at 235.771 kb on - strand, within QEN71_RS40850 at 235.771 kb on - strand, within QEN71_RS40850 at 235.771 kb on - strand, within QEN71_RS40850 at 235.771 kb on - strand, within QEN71_RS40850 at 235.771 kb on - strand, within QEN71_RS40850 at 235.771 kb on - strand, within QEN71_RS40850 at 235.838 kb on + strand, within QEN71_RS40850 at 235.838 kb on + strand, within QEN71_RS40850 at 235.838 kb on + strand, within QEN71_RS40850 at 235.839 kb on - strand, within QEN71_RS40850 at 235.839 kb on - strand, within QEN71_RS40850 at 235.839 kb on - strand, within QEN71_RS40850 at 235.940 kb on + strand, within QEN71_RS40850 at 235.940 kb on + strand, within QEN71_RS40850 at 236.076 kb on + strand, within QEN71_RS40850 at 236.133 kb on + strand, within QEN71_RS40850 at 236.142 kb on + strand, within QEN71_RS40850 at 236.142 kb on + strand, within QEN71_RS40850 at 236.142 kb on + strand, within QEN71_RS40850 at 236.143 kb on - strand, within QEN71_RS40850 at 236.143 kb on - strand, within QEN71_RS40850 at 236.143 kb on - strand, within QEN71_RS40850 at 236.143 kb on - strand, within QEN71_RS40850 at 236.143 kb on - strand, within QEN71_RS40850 at 236.144 kb on + strand, within QEN71_RS40850 at 236.151 kb on + strand, within QEN71_RS40850 at 236.151 kb on + strand, within QEN71_RS40850 at 236.152 kb on - strand, within QEN71_RS40850 at 236.162 kb on + strand, within QEN71_RS40850 at 236.163 kb on - strand, within QEN71_RS40850 at 236.163 kb on - strand, within QEN71_RS40850 at 236.163 kb on - strand, within QEN71_RS40850 at 236.163 kb on - strand, within QEN71_RS40850 at 236.170 kb on - strand, within QEN71_RS40850 at 236.170 kb on - strand, within QEN71_RS40850 at 236.170 kb on - strand, within QEN71_RS40850 at 236.170 kb on - strand, within QEN71_RS40850 at 236.507 kb on + strand at 236.508 kb on - strand at 236.554 kb on + strand at 236.555 kb on - strand at 236.601 kb on + strand at 236.601 kb on + strand at 236.608 kb on - strand at 236.608 kb on - strand at 236.629 kb on + strand at 236.647 kb on + strand at 236.797 kb on + strand at 236.797 kb on + strand at 236.798 kb on - strand at 236.798 kb on - strand at 236.853 kb on + strand at 236.854 kb on - strand at 236.854 kb on - strand at 236.854 kb on - strand at 236.884 kb on + strand, within QEN71_RS40855 at 236.885 kb on - strand, within QEN71_RS40855 at 236.885 kb on - strand, within QEN71_RS40855 at 236.963 kb on + strand, within QEN71_RS40855 at 236.964 kb on - strand, within QEN71_RS40855 at 237.017 kb on + strand, within QEN71_RS40855 at 237.017 kb on + strand, within QEN71_RS40855 at 237.018 kb on - strand, within QEN71_RS40855 at 237.111 kb on + strand, within QEN71_RS40855 at 237.111 kb on + strand, within QEN71_RS40855 at 237.111 kb on + strand, within QEN71_RS40855 at 237.112 kb on - strand, within QEN71_RS40855 at 237.284 kb on + strand, within QEN71_RS40855 at 237.285 kb on - strand, within QEN71_RS40855 at 237.285 kb on - strand, within QEN71_RS40855 at 237.303 kb on + strand, within QEN71_RS40855
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 233,493 - QEN71_RS40845 0.73 -1.3 233,611 + QEN71_RS40845 0.87 +0.2 233,612 - QEN71_RS40845 0.87 +2.2 233,661 - +0.1 233,679 + -0.1 233,717 - +0.2 233,733 + -0.3 233,733 + -0.8 233,733 + +0.2 233,742 - -1.2 233,742 - +0.4 233,755 + -1.1 233,755 + -2.0 233,756 - -1.4 233,756 - -0.1 233,756 - +0.0 233,771 + -0.4 233,771 + +0.6 233,772 - -0.6 233,772 - -0.3 233,772 - -0.9 233,772 - +1.4 233,775 + -0.2 233,776 - +0.6 233,776 - +0.6 233,776 - -0.6 233,776 - +0.1 233,776 - +1.3 233,776 - +0.4 233,776 - -0.4 233,776 - -0.4 233,776 - +0.3 233,786 - -0.9 233,821 - -2.0 233,821 - +0.3 233,821 - +0.3 233,821 - -0.6 233,821 - -0.5 233,821 - -1.7 233,821 - -0.8 233,821 - +1.7 233,857 + -1.1 233,857 + -0.0 233,933 + +0.2 233,933 + +0.0 233,933 + +0.6 233,933 + +0.4 233,933 + +0.1 233,933 + +0.1 233,933 + -1.4 233,933 + -1.9 233,933 + -2.1 233,934 - +0.2 233,934 - -1.1 233,934 - -1.5 233,934 - -0.9 233,934 - -0.4 233,934 - -0.1 233,934 - +0.4 233,934 - -0.4 233,934 - -1.9 233,934 - +1.2 234,000 - -0.6 234,038 + +1.1 234,039 - +1.5 234,039 - +0.1 234,047 + +0.9 234,158 - +0.9 234,185 - -1.0 234,255 + -1.0 234,255 + +0.8 234,255 + +1.0 234,256 - +0.4 234,256 - +0.2 234,256 - -0.1 234,256 - +0.7 234,256 - -0.3 234,256 - -0.1 234,260 - +0.3 234,295 - -1.4 234,295 - +0.2 234,352 + -1.3 234,352 + +0.3 234,352 + +1.2 234,353 - -0.4 234,489 + +0.1 234,490 - +0.9 234,545 + -0.9 234,545 + -0.8 234,545 + +0.2 234,545 + -0.6 234,545 + +0.8 234,545 + +0.8 234,546 - -0.4 234,546 - +1.2 234,546 - -1.1 234,546 - +1.0 234,546 - -0.6 234,546 - +2.5 234,546 - -0.4 234,546 - -1.0 234,638 - -1.3 234,709 - QEN71_RS40850 0.11 +2.4 234,748 - QEN71_RS40850 0.13 +0.7 234,748 - QEN71_RS40850 0.13 +0.1 234,873 + QEN71_RS40850 0.20 -1.1 235,035 + QEN71_RS40850 0.28 +1.6 235,035 + QEN71_RS40850 0.28 -1.2 235,035 + QEN71_RS40850 0.28 +1.1 235,035 + QEN71_RS40850 0.28 -1.5 235,036 - QEN71_RS40850 0.28 -0.6 235,036 - QEN71_RS40850 0.28 +0.9 235,036 - QEN71_RS40850 0.28 -0.3 235,071 + QEN71_RS40850 0.30 +0.4 235,071 + QEN71_RS40850 0.30 +0.0 235,095 + QEN71_RS40850 0.31 -0.1 235,095 + QEN71_RS40850 0.31 +0.5 235,131 + QEN71_RS40850 0.33 -1.3 235,131 + QEN71_RS40850 0.33 -0.3 235,132 - QEN71_RS40850 0.33 +1.2 235,132 - QEN71_RS40850 0.33 -0.6 235,132 - QEN71_RS40850 0.33 -1.1 235,132 - QEN71_RS40850 0.33 -0.9 235,132 - QEN71_RS40850 0.33 -0.8 235,389 + QEN71_RS40850 0.46 -0.6 235,389 + QEN71_RS40850 0.46 -0.8 235,390 - QEN71_RS40850 0.46 +0.2 235,397 + QEN71_RS40850 0.46 -0.4 235,419 - QEN71_RS40850 0.48 +0.6 235,471 - QEN71_RS40850 0.50 -0.1 235,471 - QEN71_RS40850 0.50 +1.9 235,647 + QEN71_RS40850 0.59 -2.1 235,647 + QEN71_RS40850 0.59 -0.7 235,647 + QEN71_RS40850 0.59 +0.2 235,647 + QEN71_RS40850 0.59 +0.7 235,648 - QEN71_RS40850 0.59 -0.8 235,751 + QEN71_RS40850 0.65 -1.4 235,751 + QEN71_RS40850 0.65 +0.0 235,751 + QEN71_RS40850 0.65 -0.1 235,751 + QEN71_RS40850 0.65 +0.6 235,752 - QEN71_RS40850 0.65 -0.9 235,752 - QEN71_RS40850 0.65 +0.8 235,752 - QEN71_RS40850 0.65 -0.8 235,756 + QEN71_RS40850 0.65 +1.1 235,757 - QEN71_RS40850 0.65 +0.3 235,770 + QEN71_RS40850 0.66 +0.0 235,770 + QEN71_RS40850 0.66 -1.2 235,770 + QEN71_RS40850 0.66 +2.3 235,770 + QEN71_RS40850 0.66 -0.3 235,770 + QEN71_RS40850 0.66 -1.2 235,770 + QEN71_RS40850 0.66 -0.2 235,770 + QEN71_RS40850 0.66 +0.6 235,770 + QEN71_RS40850 0.66 -0.1 235,771 - QEN71_RS40850 0.66 -0.6 235,771 - QEN71_RS40850 0.66 +1.8 235,771 - QEN71_RS40850 0.66 -1.3 235,771 - QEN71_RS40850 0.66 -0.5 235,771 - QEN71_RS40850 0.66 -0.7 235,771 - QEN71_RS40850 0.66 -1.0 235,838 + QEN71_RS40850 0.69 +0.5 235,838 + QEN71_RS40850 0.69 +0.2 235,838 + QEN71_RS40850 0.69 -1.6 235,839 - QEN71_RS40850 0.69 -2.0 235,839 - QEN71_RS40850 0.69 -0.4 235,839 - QEN71_RS40850 0.69 +0.9 235,940 + QEN71_RS40850 0.74 -1.8 235,940 + QEN71_RS40850 0.74 -0.8 236,076 + QEN71_RS40850 0.81 +0.7 236,133 + QEN71_RS40850 0.84 -1.7 236,142 + QEN71_RS40850 0.85 +1.2 236,142 + QEN71_RS40850 0.85 +1.8 236,142 + QEN71_RS40850 0.85 +1.2 236,143 - QEN71_RS40850 0.85 +0.2 236,143 - QEN71_RS40850 0.85 -0.2 236,143 - QEN71_RS40850 0.85 +0.0 236,143 - QEN71_RS40850 0.85 +0.8 236,143 - QEN71_RS40850 0.85 -0.2 236,144 + QEN71_RS40850 0.85 -0.7 236,151 + QEN71_RS40850 0.85 -0.3 236,151 + QEN71_RS40850 0.85 +1.4 236,152 - QEN71_RS40850 0.85 -2.3 236,162 + QEN71_RS40850 0.86 -0.2 236,163 - QEN71_RS40850 0.86 -1.1 236,163 - QEN71_RS40850 0.86 +0.3 236,163 - QEN71_RS40850 0.86 +0.2 236,163 - QEN71_RS40850 0.86 +1.4 236,170 - QEN71_RS40850 0.86 +0.2 236,170 - QEN71_RS40850 0.86 +2.0 236,170 - QEN71_RS40850 0.86 +0.2 236,170 - QEN71_RS40850 0.86 -1.0 236,507 + -1.6 236,508 - +1.2 236,554 + +1.3 236,555 - -2.3 236,601 + +0.8 236,601 + -1.1 236,608 - -0.2 236,608 - +1.2 236,629 + +0.6 236,647 + +0.2 236,797 + -0.1 236,797 + -2.5 236,798 - +1.9 236,798 - +0.6 236,853 + +0.8 236,854 - -1.1 236,854 - +0.2 236,854 - -0.6 236,884 + QEN71_RS40855 0.11 -2.0 236,885 - QEN71_RS40855 0.11 -0.3 236,885 - QEN71_RS40855 0.11 -1.5 236,963 + QEN71_RS40855 0.25 +0.0 236,964 - QEN71_RS40855 0.25 +2.7 237,017 + QEN71_RS40855 0.35 +0.1 237,017 + QEN71_RS40855 0.35 +0.0 237,018 - QEN71_RS40855 0.35 +0.0 237,111 + QEN71_RS40855 0.51 -1.2 237,111 + QEN71_RS40855 0.51 -0.4 237,111 + QEN71_RS40855 0.51 -1.0 237,112 - QEN71_RS40855 0.51 +2.7 237,284 + QEN71_RS40855 0.82 -0.8 237,285 - QEN71_RS40855 0.82 -0.8 237,285 - QEN71_RS40855 0.82 -0.4 237,303 + QEN71_RS40855 0.85 -1.1
Or see this region's nucleotide sequence