Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS34000 and QEN71_RS34005 are separated by 66 nucleotides QEN71_RS34005 and QEN71_RS34010 are separated by 59 nucleotides
QEN71_RS34000: QEN71_RS34000 - D-2-hydroxyacid dehydrogenase, at 945,322 to 946,278
_RS34000
QEN71_RS34005: QEN71_RS34005 - aminotransferase class V-fold PLP-dependent enzyme, at 946,345 to 947,610
_RS34005
QEN71_RS34010: QEN71_RS34010 - serine hydroxymethyltransferase, at 947,670 to 948,992
_RS34010
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1
2 at 945.714 kb on - strand, within QEN71_RS34000 at 945.714 kb on - strand, within QEN71_RS34000 at 945.714 kb on - strand, within QEN71_RS34000 at 946.326 kb on + strand at 946.326 kb on + strand at 946.326 kb on + strand at 946.326 kb on + strand at 946.327 kb on - strand at 946.327 kb on - strand at 946.614 kb on - strand, within QEN71_RS34005 at 946.766 kb on + strand, within QEN71_RS34005 at 946.766 kb on + strand, within QEN71_RS34005 at 946.767 kb on - strand, within QEN71_RS34005 at 946.767 kb on - strand, within QEN71_RS34005 at 947.439 kb on - strand, within QEN71_RS34005 at 947.660 kb on - strand at 948.326 kb on - strand, within QEN71_RS34010 at 948.353 kb on - strand, within QEN71_RS34010 at 948.380 kb on - strand, within QEN71_RS34010 at 948.526 kb on + strand, within QEN71_RS34010
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 945,714 - QEN71_RS34000 0.41 -0.7 945,714 - QEN71_RS34000 0.41 -0.6 945,714 - QEN71_RS34000 0.41 +0.2 946,326 + -2.0 946,326 + +0.6 946,326 + -0.1 946,326 + -0.1 946,327 - +0.6 946,327 - +2.1 946,614 - QEN71_RS34005 0.21 -1.0 946,766 + QEN71_RS34005 0.33 -0.8 946,766 + QEN71_RS34005 0.33 -1.8 946,767 - QEN71_RS34005 0.33 +0.4 946,767 - QEN71_RS34005 0.33 -0.2 947,439 - QEN71_RS34005 0.86 -2.3 947,660 - +0.2 948,326 - QEN71_RS34010 0.50 +1.2 948,353 - QEN71_RS34010 0.52 +0.3 948,380 - QEN71_RS34010 0.54 +0.4 948,526 + QEN71_RS34010 0.65 -1.4
Or see this region's nucleotide sequence