Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS33175

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS33170 and QEN71_RS33175 are separated by 186 nucleotidesQEN71_RS33175 and QEN71_RS33180 are separated by 152 nucleotidesQEN71_RS33180 and QEN71_RS33185 are separated by 3 nucleotides QEN71_RS33170: QEN71_RS33170 - elongation factor G, at 768,768 to 770,813 _RS33170 QEN71_RS33175: QEN71_RS33175 - DsbA family oxidoreductase, at 771,000 to 771,653 _RS33175 QEN71_RS33180: QEN71_RS33180 - cytochrome b/b6 domain-containing protein, at 771,806 to 772,399 _RS33180 QEN71_RS33185: QEN71_RS33185 - molybdopterin-dependent oxidoreductase, at 772,403 to 773,194 _RS33185 Position (kb) 770 771 772Strain fitness (log2 ratio) -2 -1 0 1 2at 770.006 kb on - strand, within QEN71_RS33170at 770.191 kb on + strand, within QEN71_RS33170at 770.192 kb on - strand, within QEN71_RS33170at 770.192 kb on - strand, within QEN71_RS33170at 770.192 kb on - strand, within QEN71_RS33170at 770.336 kb on + strand, within QEN71_RS33170at 770.337 kb on - strand, within QEN71_RS33170at 770.337 kb on - strand, within QEN71_RS33170at 770.587 kb on + strand, within QEN71_RS33170at 770.587 kb on + strand, within QEN71_RS33170at 770.587 kb on + strand, within QEN71_RS33170at 770.588 kb on - strand, within QEN71_RS33170at 770.588 kb on - strand, within QEN71_RS33170at 770.605 kb on + strand, within QEN71_RS33170at 770.605 kb on + strand, within QEN71_RS33170at 770.644 kb on + strandat 770.645 kb on - strandat 770.645 kb on - strandat 770.786 kb on + strandat 770.786 kb on + strandat 770.787 kb on - strandat 770.787 kb on - strandat 770.807 kb on - strandat 770.848 kb on + strandat 770.848 kb on + strandat 770.904 kb on + strandat 770.956 kb on + strandat 770.957 kb on - strandat 771.035 kb on + strandat 771.036 kb on - strandat 771.073 kb on + strand, within QEN71_RS33175at 771.073 kb on + strand, within QEN71_RS33175at 771.180 kb on + strand, within QEN71_RS33175at 771.180 kb on + strand, within QEN71_RS33175at 771.180 kb on + strand, within QEN71_RS33175at 771.195 kb on + strand, within QEN71_RS33175at 771.267 kb on - strand, within QEN71_RS33175at 771.267 kb on - strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.292 kb on - strand, within QEN71_RS33175at 771.292 kb on - strand, within QEN71_RS33175at 771.332 kb on + strand, within QEN71_RS33175at 771.378 kb on + strand, within QEN71_RS33175at 771.455 kb on + strand, within QEN71_RS33175at 771.486 kb on + strand, within QEN71_RS33175at 771.520 kb on - strand, within QEN71_RS33175at 771.520 kb on - strand, within QEN71_RS33175at 771.520 kb on - strand, within QEN71_RS33175at 771.651 kb on + strandat 771.715 kb on + strandat 771.716 kb on - strandat 771.902 kb on + strand, within QEN71_RS33180at 772.154 kb on + strand, within QEN71_RS33180at 772.154 kb on + strand, within QEN71_RS33180at 772.178 kb on + strand, within QEN71_RS33180at 772.277 kb on + strand, within QEN71_RS33180at 772.638 kb on + strand, within QEN71_RS33185at 772.639 kb on - strand, within QEN71_RS33185at 772.639 kb on - strand, within QEN71_RS33185

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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770,006 - QEN71_RS33170 0.61 -1.0
770,191 + QEN71_RS33170 0.70 +0.1
770,192 - QEN71_RS33170 0.70 +0.1
770,192 - QEN71_RS33170 0.70 -0.9
770,192 - QEN71_RS33170 0.70 -1.4
770,336 + QEN71_RS33170 0.77 -1.8
770,337 - QEN71_RS33170 0.77 +0.2
770,337 - QEN71_RS33170 0.77 -1.3
770,587 + QEN71_RS33170 0.89 -0.8
770,587 + QEN71_RS33170 0.89 -0.3
770,587 + QEN71_RS33170 0.89 -0.3
770,588 - QEN71_RS33170 0.89 +0.0
770,588 - QEN71_RS33170 0.89 +1.3
770,605 + QEN71_RS33170 0.90 -2.4
770,605 + QEN71_RS33170 0.90 -0.1
770,644 + -1.0
770,645 - +0.2
770,645 - -2.0
770,786 + -0.1
770,786 + -2.5
770,787 - -0.4
770,787 - -0.4
770,807 - +0.4
770,848 + -1.8
770,848 + +2.2
770,904 + -1.1
770,956 + +0.0
770,957 - -1.0
771,035 + -0.2
771,036 - -0.8
771,073 + QEN71_RS33175 0.11 +0.1
771,073 + QEN71_RS33175 0.11 +0.3
771,180 + QEN71_RS33175 0.28 -2.3
771,180 + QEN71_RS33175 0.28 +1.1
771,180 + QEN71_RS33175 0.28 -0.5
771,195 + QEN71_RS33175 0.30 -1.0
771,267 - QEN71_RS33175 0.41 +0.2
771,267 - QEN71_RS33175 0.41 -0.6
771,285 + QEN71_RS33175 0.44 -1.2
771,285 + QEN71_RS33175 0.44 -1.0
771,285 + QEN71_RS33175 0.44 +1.3
771,285 + QEN71_RS33175 0.44 +0.6
771,285 + QEN71_RS33175 0.44 +0.1
771,286 - QEN71_RS33175 0.44 -0.1
771,286 - QEN71_RS33175 0.44 +0.2
771,286 - QEN71_RS33175 0.44 -0.7
771,286 - QEN71_RS33175 0.44 +0.4
771,286 - QEN71_RS33175 0.44 -0.0
771,286 - QEN71_RS33175 0.44 -1.4
771,286 - QEN71_RS33175 0.44 +1.2
771,291 + QEN71_RS33175 0.44 -0.8
771,291 + QEN71_RS33175 0.44 +0.8
771,291 + QEN71_RS33175 0.44 +0.6
771,291 + QEN71_RS33175 0.44 -0.7
771,292 - QEN71_RS33175 0.45 -1.2
771,292 - QEN71_RS33175 0.45 -0.8
771,332 + QEN71_RS33175 0.51 +0.7
771,378 + QEN71_RS33175 0.58 -0.4
771,455 + QEN71_RS33175 0.70 +0.2
771,486 + QEN71_RS33175 0.74 -1.0
771,520 - QEN71_RS33175 0.80 -0.8
771,520 - QEN71_RS33175 0.80 +0.9
771,520 - QEN71_RS33175 0.80 -0.4
771,651 + +0.0
771,715 + +0.9
771,716 - -0.9
771,902 + QEN71_RS33180 0.16 -0.9
772,154 + QEN71_RS33180 0.59 -1.3
772,154 + QEN71_RS33180 0.59 -0.1
772,178 + QEN71_RS33180 0.63 -0.4
772,277 + QEN71_RS33180 0.79 -1.2
772,638 + QEN71_RS33185 0.30 +0.2
772,639 - QEN71_RS33185 0.30 -0.3
772,639 - QEN71_RS33185 0.30 +0.3

Or see this region's nucleotide sequence