Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31790

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31785 and QEN71_RS31790 are separated by 30 nucleotidesQEN71_RS31790 and QEN71_RS31795 are separated by 34 nucleotides QEN71_RS31785: QEN71_RS31785 - HAD family hydrolase, at 482,006 to 482,695 _RS31785 QEN71_RS31790: QEN71_RS31790 - LysR family transcriptional regulator, at 482,726 to 483,586 _RS31790 QEN71_RS31795: QEN71_RS31795 - multidrug transporter subunit MdtD, at 483,621 to 485,126 _RS31795 Position (kb) 482 483 484Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 481.750 kb on + strandat 481.750 kb on + strandat 481.751 kb on - strandat 481.751 kb on - strandat 481.756 kb on + strandat 481.756 kb on + strandat 481.757 kb on - strandat 481.767 kb on + strandat 481.767 kb on + strandat 481.768 kb on - strandat 481.768 kb on - strandat 481.768 kb on - strandat 481.860 kb on + strandat 481.860 kb on + strandat 481.860 kb on + strandat 481.860 kb on + strandat 481.860 kb on + strandat 481.860 kb on + strandat 481.861 kb on - strandat 481.861 kb on - strandat 481.861 kb on - strandat 481.861 kb on - strandat 481.861 kb on - strandat 481.922 kb on - strandat 481.999 kb on - strandat 482.091 kb on + strand, within QEN71_RS31785at 482.091 kb on + strand, within QEN71_RS31785at 482.138 kb on + strand, within QEN71_RS31785at 482.255 kb on + strand, within QEN71_RS31785at 482.255 kb on + strand, within QEN71_RS31785at 482.255 kb on + strand, within QEN71_RS31785at 482.255 kb on + strand, within QEN71_RS31785at 482.255 kb on + strand, within QEN71_RS31785at 482.256 kb on - strand, within QEN71_RS31785at 482.256 kb on - strand, within QEN71_RS31785at 482.256 kb on - strand, within QEN71_RS31785at 482.256 kb on - strand, within QEN71_RS31785at 482.267 kb on + strand, within QEN71_RS31785at 482.429 kb on + strand, within QEN71_RS31785at 482.429 kb on + strand, within QEN71_RS31785at 482.429 kb on + strand, within QEN71_RS31785at 482.430 kb on - strand, within QEN71_RS31785at 482.430 kb on - strand, within QEN71_RS31785at 482.430 kb on - strand, within QEN71_RS31785at 482.430 kb on - strand, within QEN71_RS31785at 482.430 kb on - strand, within QEN71_RS31785at 482.486 kb on + strand, within QEN71_RS31785at 482.486 kb on + strand, within QEN71_RS31785at 482.486 kb on + strand, within QEN71_RS31785at 482.486 kb on + strand, within QEN71_RS31785at 482.486 kb on + strand, within QEN71_RS31785at 482.487 kb on - strand, within QEN71_RS31785at 482.579 kb on + strand, within QEN71_RS31785at 482.580 kb on - strand, within QEN71_RS31785at 482.610 kb on - strand, within QEN71_RS31785at 482.626 kb on + strand, within QEN71_RS31785at 482.626 kb on + strand, within QEN71_RS31785at 482.676 kb on + strandat 482.727 kb on + strandat 482.728 kb on - strandat 482.892 kb on + strand, within QEN71_RS31790at 482.892 kb on + strand, within QEN71_RS31790at 482.893 kb on - strand, within QEN71_RS31790at 482.893 kb on - strand, within QEN71_RS31790at 482.893 kb on - strand, within QEN71_RS31790at 482.893 kb on - strand, within QEN71_RS31790at 483.192 kb on + strand, within QEN71_RS31790at 483.192 kb on + strand, within QEN71_RS31790at 483.192 kb on + strand, within QEN71_RS31790at 483.192 kb on + strand, within QEN71_RS31790at 483.192 kb on + strand, within QEN71_RS31790at 483.192 kb on + strand, within QEN71_RS31790at 483.192 kb on + strand, within QEN71_RS31790at 483.192 kb on + strand, within QEN71_RS31790at 483.193 kb on - strand, within QEN71_RS31790at 483.193 kb on - strand, within QEN71_RS31790at 483.264 kb on - strand, within QEN71_RS31790at 483.264 kb on - strand, within QEN71_RS31790at 483.478 kb on + strand, within QEN71_RS31790at 483.478 kb on + strand, within QEN71_RS31790at 483.479 kb on - strand, within QEN71_RS31790at 483.479 kb on - strand, within QEN71_RS31790at 483.660 kb on - strandat 483.766 kb on + strandat 483.766 kb on + strandat 483.767 kb on - strandat 483.894 kb on + strand, within QEN71_RS31795at 483.894 kb on + strand, within QEN71_RS31795at 483.966 kb on + strand, within QEN71_RS31795at 483.967 kb on - strand, within QEN71_RS31795at 484.022 kb on + strand, within QEN71_RS31795at 484.022 kb on + strand, within QEN71_RS31795at 484.022 kb on + strand, within QEN71_RS31795at 484.022 kb on + strand, within QEN71_RS31795at 484.023 kb on - strand, within QEN71_RS31795at 484.128 kb on + strand, within QEN71_RS31795at 484.128 kb on + strand, within QEN71_RS31795at 484.128 kb on + strand, within QEN71_RS31795at 484.128 kb on + strand, within QEN71_RS31795at 484.128 kb on + strand, within QEN71_RS31795at 484.128 kb on + strand, within QEN71_RS31795at 484.128 kb on + strand, within QEN71_RS31795at 484.129 kb on - strand, within QEN71_RS31795at 484.129 kb on - strand, within QEN71_RS31795at 484.129 kb on - strand, within QEN71_RS31795at 484.129 kb on - strand, within QEN71_RS31795at 484.455 kb on + strand, within QEN71_RS31795at 484.455 kb on + strand, within QEN71_RS31795at 484.456 kb on - strand, within QEN71_RS31795at 484.456 kb on - strand, within QEN71_RS31795at 484.456 kb on - strand, within QEN71_RS31795at 484.580 kb on + strand, within QEN71_RS31795at 484.580 kb on + strand, within QEN71_RS31795at 484.580 kb on + strand, within QEN71_RS31795at 484.580 kb on + strand, within QEN71_RS31795at 484.581 kb on - strand, within QEN71_RS31795at 484.581 kb on - strand, within QEN71_RS31795at 484.581 kb on - strand, within QEN71_RS31795at 484.581 kb on - strand, within QEN71_RS31795at 484.581 kb on - strand, within QEN71_RS31795at 484.581 kb on - strand, within QEN71_RS31795at 484.581 kb on - strand, within QEN71_RS31795at 484.581 kb on - strand, within QEN71_RS31795at 484.581 kb on - strand, within QEN71_RS31795at 484.581 kb on - strand, within QEN71_RS31795

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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481,750 + -0.6
481,750 + -2.4
481,751 - +1.0
481,751 - -0.1
481,756 + -2.2
481,756 + +1.5
481,757 - -0.4
481,767 + -0.3
481,767 + -0.4
481,768 - +0.6
481,768 - +0.8
481,768 - -2.6
481,860 + -0.3
481,860 + -0.2
481,860 + +0.1
481,860 + -1.3
481,860 + -1.6
481,860 + -0.2
481,861 - +1.3
481,861 - -0.1
481,861 - +0.3
481,861 - +0.5
481,861 - +0.1
481,922 - -0.9
481,999 - -0.5
482,091 + QEN71_RS31785 0.12 -0.1
482,091 + QEN71_RS31785 0.12 -0.4
482,138 + QEN71_RS31785 0.19 -0.7
482,255 + QEN71_RS31785 0.36 +0.1
482,255 + QEN71_RS31785 0.36 +0.6
482,255 + QEN71_RS31785 0.36 +0.1
482,255 + QEN71_RS31785 0.36 +1.7
482,255 + QEN71_RS31785 0.36 -1.0
482,256 - QEN71_RS31785 0.36 -1.5
482,256 - QEN71_RS31785 0.36 -0.6
482,256 - QEN71_RS31785 0.36 +0.3
482,256 - QEN71_RS31785 0.36 -1.8
482,267 + QEN71_RS31785 0.38 -0.4
482,429 + QEN71_RS31785 0.61 -1.5
482,429 + QEN71_RS31785 0.61 +0.1
482,429 + QEN71_RS31785 0.61 -1.5
482,430 - QEN71_RS31785 0.61 -1.9
482,430 - QEN71_RS31785 0.61 -1.1
482,430 - QEN71_RS31785 0.61 -0.2
482,430 - QEN71_RS31785 0.61 +1.4
482,430 - QEN71_RS31785 0.61 -0.5
482,486 + QEN71_RS31785 0.70 -2.2
482,486 + QEN71_RS31785 0.70 -0.4
482,486 + QEN71_RS31785 0.70 -0.5
482,486 + QEN71_RS31785 0.70 -0.9
482,486 + QEN71_RS31785 0.70 +0.4
482,487 - QEN71_RS31785 0.70 -0.1
482,579 + QEN71_RS31785 0.83 +0.4
482,580 - QEN71_RS31785 0.83 -2.3
482,610 - QEN71_RS31785 0.88 +0.7
482,626 + QEN71_RS31785 0.90 +0.3
482,626 + QEN71_RS31785 0.90 -1.1
482,676 + -0.9
482,727 + -0.1
482,728 - -1.2
482,892 + QEN71_RS31790 0.19 -0.3
482,892 + QEN71_RS31790 0.19 -3.3
482,893 - QEN71_RS31790 0.19 -0.5
482,893 - QEN71_RS31790 0.19 +1.1
482,893 - QEN71_RS31790 0.19 +0.3
482,893 - QEN71_RS31790 0.19 -0.2
483,192 + QEN71_RS31790 0.54 +1.0
483,192 + QEN71_RS31790 0.54 +0.4
483,192 + QEN71_RS31790 0.54 -1.3
483,192 + QEN71_RS31790 0.54 -0.5
483,192 + QEN71_RS31790 0.54 -3.4
483,192 + QEN71_RS31790 0.54 -2.0
483,192 + QEN71_RS31790 0.54 -0.3
483,192 + QEN71_RS31790 0.54 +1.1
483,193 - QEN71_RS31790 0.54 -2.4
483,193 - QEN71_RS31790 0.54 +0.3
483,264 - QEN71_RS31790 0.62 -1.1
483,264 - QEN71_RS31790 0.62 -0.5
483,478 + QEN71_RS31790 0.87 +0.7
483,478 + QEN71_RS31790 0.87 -0.7
483,479 - QEN71_RS31790 0.87 -0.5
483,479 - QEN71_RS31790 0.87 -0.2
483,660 - -0.5
483,766 + -0.4
483,766 + -2.6
483,767 - -1.9
483,894 + QEN71_RS31795 0.18 +0.2
483,894 + QEN71_RS31795 0.18 -1.8
483,966 + QEN71_RS31795 0.23 +0.7
483,967 - QEN71_RS31795 0.23 -2.6
484,022 + QEN71_RS31795 0.27 -3.5
484,022 + QEN71_RS31795 0.27 -1.6
484,022 + QEN71_RS31795 0.27 +0.1
484,022 + QEN71_RS31795 0.27 +0.7
484,023 - QEN71_RS31795 0.27 -0.5
484,128 + QEN71_RS31795 0.34 -0.0
484,128 + QEN71_RS31795 0.34 +3.1
484,128 + QEN71_RS31795 0.34 -0.4
484,128 + QEN71_RS31795 0.34 +0.1
484,128 + QEN71_RS31795 0.34 -0.0
484,128 + QEN71_RS31795 0.34 +3.0
484,128 + QEN71_RS31795 0.34 +0.8
484,129 - QEN71_RS31795 0.34 +0.4
484,129 - QEN71_RS31795 0.34 -0.2
484,129 - QEN71_RS31795 0.34 +0.2
484,129 - QEN71_RS31795 0.34 +1.3
484,455 + QEN71_RS31795 0.55 -0.5
484,455 + QEN71_RS31795 0.55 -1.6
484,456 - QEN71_RS31795 0.55 +0.2
484,456 - QEN71_RS31795 0.55 +0.1
484,456 - QEN71_RS31795 0.55 +1.1
484,580 + QEN71_RS31795 0.64 +0.3
484,580 + QEN71_RS31795 0.64 -1.1
484,580 + QEN71_RS31795 0.64 +0.2
484,580 + QEN71_RS31795 0.64 -0.3
484,581 - QEN71_RS31795 0.64 -1.6
484,581 - QEN71_RS31795 0.64 -0.2
484,581 - QEN71_RS31795 0.64 -0.5
484,581 - QEN71_RS31795 0.64 +0.5
484,581 - QEN71_RS31795 0.64 +0.1
484,581 - QEN71_RS31795 0.64 +1.0
484,581 - QEN71_RS31795 0.64 +1.2
484,581 - QEN71_RS31795 0.64 -2.0
484,581 - QEN71_RS31795 0.64 +1.9
484,581 - QEN71_RS31795 0.64 -0.1

Or see this region's nucleotide sequence