Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28545

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
6,329,217	+		QEN71_RS28530	0.75	+0.1
6,329,217	+		QEN71_RS28530	0.75	-1.1
6,329,217	+		QEN71_RS28530	0.75	-1.5
6,329,218	-		QEN71_RS28530	0.75	-1.1
6,329,218	-		QEN71_RS28530	0.75	-0.2
6,329,218	-		QEN71_RS28530	0.75	-0.5
6,329,464	+				+2.0
6,329,464	+				-2.1
6,329,464	+				+2.5
6,329,464	+				+0.3
6,329,465	-				-0.2
6,329,465	-				+0.2
6,329,467	+				-1.2
6,329,467	+				+0.2
6,329,467	+				-1.7
6,329,467	+				-1.3
6,329,467	+				-1.7
6,329,467	+				-1.2
6,329,468	-				-0.4
6,329,468	-				+0.2
6,329,468	-				-0.5
6,329,468	-				-1.1
6,329,491	+				-2.0
6,329,492	-				-1.2
6,329,492	-				-0.8
6,329,543	+		QEN71_RS28535	0.20	-0.6
6,329,543	+		QEN71_RS28535	0.20	+0.0
6,329,544	-		QEN71_RS28535	0.20	-1.3
6,329,544	-		QEN71_RS28535	0.20	-0.7
6,329,545	+		QEN71_RS28535	0.21	+0.3
6,329,545	+		QEN71_RS28535	0.21	-1.2
6,329,545	+		QEN71_RS28535	0.21	+2.7
6,329,545	+		QEN71_RS28535	0.21	-1.3
6,329,545	+		QEN71_RS28535	0.21	-0.2
6,329,545	+		QEN71_RS28535	0.21	-1.4
6,329,545	+		QEN71_RS28535	0.21	-0.2
6,329,545	+		QEN71_RS28535	0.21	-1.0
6,329,545	+		QEN71_RS28535	0.21	+0.8
6,329,545	+		QEN71_RS28535	0.21	-1.1
6,329,545	+		QEN71_RS28535	0.21	-0.2
6,329,545	+		QEN71_RS28535	0.21	-0.4
6,329,546	-		QEN71_RS28535	0.21	-0.2
6,329,546	-		QEN71_RS28535	0.21	-1.0
6,329,546	-		QEN71_RS28535	0.21	-0.4
6,329,546	-		QEN71_RS28535	0.21	+0.5
6,329,546	-		QEN71_RS28535	0.21	-0.1
6,329,546	-		QEN71_RS28535	0.21	-0.7
6,329,546	-		QEN71_RS28535	0.21	-0.2
6,329,641	+		QEN71_RS28535	0.57	+1.1
6,329,642	-		QEN71_RS28535	0.57	+0.0
6,329,642	-		QEN71_RS28535	0.57	-0.3
6,329,642	-		QEN71_RS28535	0.57	-0.2
6,329,950	+				+0.5
6,329,950	+				+0.3
6,329,950	+				+0.6
6,329,951	-				-0.5
6,329,951	-				-0.3
6,329,951	-				-0.2
6,329,991	+				-0.6
6,329,992	-				-1.0
6,329,998	-				-0.2
6,329,998	-				-1.1
6,330,020	+				+0.3
6,330,020	+				+0.2
6,330,021	-				-2.7
6,330,021	-				+0.6
6,330,037	+				-0.9
6,330,037	+				+0.0
6,330,037	+				-0.6
6,330,037	+				-0.2
6,330,038	-				-3.0
6,330,038	-				-0.3
6,330,070	+				+0.5
6,330,071	-				+0.3
6,330,071	-				+0.0
6,330,176	+				-0.2
6,330,176	+				+0.6
6,330,176	+				-0.2
6,330,177	-				+0.3
6,330,177	-				-0.8
6,330,177	-				-0.7
6,330,177	-				+0.4
6,330,207	+				-1.2
6,330,208	-				-1.0
6,330,255	+				-0.3
6,330,285	+				-0.3
6,330,285	+				+0.1
6,330,286	-				-0.8
6,330,298	+				+0.1
6,330,298	+				-0.1
6,330,299	-				-0.5
6,330,652	+		QEN71_RS28545	0.37	-0.5
6,330,652	+		QEN71_RS28545	0.37	+0.1
6,330,652	+		QEN71_RS28545	0.37	+0.6
6,330,652	+		QEN71_RS28545	0.37	-0.8
6,330,652	+		QEN71_RS28545	0.37	-0.4
6,330,652	+		QEN71_RS28545	0.37	+0.4
6,330,652	+		QEN71_RS28545	0.37	+0.1
6,330,652	+		QEN71_RS28545	0.37	+0.8
6,330,652	+		QEN71_RS28545	0.37	-1.1
6,330,653	-		QEN71_RS28545	0.37	-2.5
6,330,653	-		QEN71_RS28545	0.37	-0.5
6,330,653	-		QEN71_RS28545	0.37	-0.5
6,330,653	-		QEN71_RS28545	0.37	-0.1
6,330,653	-		QEN71_RS28545	0.37	+1.0
6,330,653	-		QEN71_RS28545	0.37	+0.5
6,330,653	-		QEN71_RS28545	0.37	+0.2
6,330,653	-		QEN71_RS28545	0.37	+3.7
6,330,653	-		QEN71_RS28545	0.37	-1.3
6,330,718	+		QEN71_RS28545	0.43	-0.7
6,330,718	+		QEN71_RS28545	0.43	+0.9
6,330,718	+		QEN71_RS28545	0.43	+0.3
6,330,718	+		QEN71_RS28545	0.43	-0.1
6,330,718	+		QEN71_RS28545	0.43	-0.5
6,330,719	-		QEN71_RS28545	0.43	-0.3
6,330,719	-		QEN71_RS28545	0.43	+0.3
6,330,719	-		QEN71_RS28545	0.43	-0.2
6,330,719	-		QEN71_RS28545	0.43	+0.7
6,330,719	-		QEN71_RS28545	0.43	-1.7
6,330,727	+		QEN71_RS28545	0.43	-0.7
6,330,727	+		QEN71_RS28545	0.43	-0.3
6,330,727	+		QEN71_RS28545	0.43	+0.0
6,330,728	-		QEN71_RS28545	0.44	-0.1
6,330,728	-		QEN71_RS28545	0.44	-2.4
6,330,728	-		QEN71_RS28545	0.44	+0.3
6,330,728	-		QEN71_RS28545	0.44	+0.0
6,330,728	-		QEN71_RS28545	0.44	+0.3
6,330,728	-		QEN71_RS28545	0.44	-0.7
6,330,728	-		QEN71_RS28545	0.44	+1.2
6,330,769	+		QEN71_RS28545	0.47	-0.5
6,330,769	+		QEN71_RS28545	0.47	-0.5
6,330,769	+		QEN71_RS28545	0.47	-0.3
6,330,770	-		QEN71_RS28545	0.47	+1.8
6,330,770	-		QEN71_RS28545	0.47	+0.9
6,330,824	+		QEN71_RS28545	0.52	-1.8
6,330,824	+		QEN71_RS28545	0.52	-0.1
6,330,824	+		QEN71_RS28545	0.52	-1.3
6,330,825	-		QEN71_RS28545	0.52	+0.2
6,330,825	-		QEN71_RS28545	0.52	+0.0
6,331,012	+		QEN71_RS28545	0.68	-0.1
6,331,012	+		QEN71_RS28545	0.68	-0.6
6,331,013	-		QEN71_RS28545	0.68	-0.1
6,331,013	-		QEN71_RS28545	0.68	-0.7
6,331,015	+		QEN71_RS28545	0.68	-0.8
6,331,015	+		QEN71_RS28545	0.68	+0.2
6,331,015	+		QEN71_RS28545	0.68	+0.6
6,331,015	+		QEN71_RS28545	0.68	+0.1
6,331,015	+		QEN71_RS28545	0.68	-1.5
6,331,015	+		QEN71_RS28545	0.68	+1.7
6,331,015	+		QEN71_RS28545	0.68	+0.5
6,331,015	+		QEN71_RS28545	0.68	+0.5
6,331,015	+		QEN71_RS28545	0.68	-1.9
6,331,016	-		QEN71_RS28545	0.68	-0.0
6,331,016	-		QEN71_RS28545	0.68	+0.3
6,331,094	+		QEN71_RS28545	0.75	-2.3
6,331,094	+		QEN71_RS28545	0.75	-0.1
6,331,094	+		QEN71_RS28545	0.75	-1.0
6,331,095	-		QEN71_RS28545	0.75	-4.2
6,331,095	-		QEN71_RS28545	0.75	+2.3
6,331,095	-		QEN71_RS28545	0.75	-1.0
6,331,283	+				+1.3
6,331,283	+				+1.5
6,331,284	-				+0.4
6,331,284	-				-0.5
6,331,351	+				+0.3
6,331,351	+				-0.0
6,331,352	-				-0.7
6,331,457	+				+1.0
6,331,458	-				+0.8
6,331,580	+				-0.3
6,331,580	+				+0.2
6,331,581	-				+1.1
6,331,597	-				+0.0
6,331,604	+				+0.6
6,331,604	+				-0.0
6,331,604	+				-0.5
6,331,604	+				-0.0
6,331,604	+				-1.0
6,331,604	+				-0.8
6,331,604	+				-0.7
6,331,604	+				+0.3
6,331,604	+				-1.5
6,331,604	+				+0.6
6,331,605	-				-0.3
6,331,605	-				+0.7
6,331,605	-				-0.9
6,331,605	-				-0.5
6,331,605	-				+0.3
6,331,605	-				+1.2
6,331,605	-				+1.2
6,331,605	-				-0.7
6,331,605	-				-1.3
6,331,647	+				+1.3
6,331,648	-				-0.5
6,331,692	+				+1.2
6,331,692	+				+0.2
6,331,693	-				+0.2
6,331,693	-				+2.9
6,331,693	-				+1.1
6,331,693	-				+0.5
6,331,693	-				+1.0
6,331,780	+				+0.2
6,331,780	+				-1.0
6,331,898	+				-1.0
6,331,898	+				+0.1
6,331,994	+		QEN71_RS28550	0.16	+0.9
6,331,995	-		QEN71_RS28550	0.16	+0.0
6,331,995	-		QEN71_RS28550	0.16	-0.3
6,331,995	-		QEN71_RS28550	0.16	+0.3
6,331,995	-		QEN71_RS28550	0.16	+2.0
6,332,105	+		QEN71_RS28550	0.23	-0.5
6,332,105	+		QEN71_RS28550	0.23	-1.5
6,332,120	+		QEN71_RS28550	0.24	+2.1
6,332,120	+		QEN71_RS28550	0.24	-0.1
6,332,120	+		QEN71_RS28550	0.24	-0.4
6,332,120	+		QEN71_RS28550	0.24	-0.7
6,332,120	+		QEN71_RS28550	0.24	-1.1
6,332,121	-		QEN71_RS28550	0.24	-0.4
6,332,121	-		QEN71_RS28550	0.24	-0.0
6,332,121	-		QEN71_RS28550	0.24	+0.4
6,332,121	-		QEN71_RS28550	0.24	+0.5
6,332,121	-		QEN71_RS28550	0.24	+1.8
6,332,121	-		QEN71_RS28550	0.24	+0.0
6,332,121	-		QEN71_RS28550	0.24	+0.2
6,332,121	-		QEN71_RS28550	0.24	-1.1
6,332,121	-		QEN71_RS28550	0.24	-0.4
6,332,121	-		QEN71_RS28550	0.24	-4.1
6,332,201	+		QEN71_RS28550	0.29	-0.9
6,332,201	+		QEN71_RS28550	0.29	+0.1
6,332,202	-		QEN71_RS28550	0.29	-0.8
6,332,202	-		QEN71_RS28550	0.29	-1.7
6,332,206	+		QEN71_RS28550	0.29	-0.7
6,332,206	+		QEN71_RS28550	0.29	-2.3
6,332,207	-		QEN71_RS28550	0.29	-0.8
6,332,207	-		QEN71_RS28550	0.29	-0.3
6,332,207	-		QEN71_RS28550	0.29	+0.2
6,332,207	-		QEN71_RS28550	0.29	-0.3
6,332,363	+		QEN71_RS28550	0.39	-0.4
6,332,363	+		QEN71_RS28550	0.39	-2.0
6,332,363	+		QEN71_RS28550	0.39	-0.7
6,332,364	-		QEN71_RS28550	0.39	-0.6