Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS25355 and QEN71_RS25360 are separated by 35 nucleotides QEN71_RS25360 and QEN71_RS25365 are separated by 208 nucleotides
QEN71_RS25355: QEN71_RS25355 - urea ABC transporter ATP-binding subunit UrtE, at 5,641,143 to 5,641,835
_RS25355
QEN71_RS25360: QEN71_RS25360 - urease accessory protein UreD, at 5,641,871 to 5,642,752
_RS25360
QEN71_RS25365: QEN71_RS25365 - transporter substrate-binding domain-containing protein, at 5,642,961 to 5,643,764
_RS25365
Position (kb) 5641
5642
5643 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5640.913 kb on + strand at 5641.154 kb on - strand at 5641.171 kb on - strand at 5641.173 kb on + strand at 5641.255 kb on + strand, within QEN71_RS25355 at 5641.270 kb on + strand, within QEN71_RS25355 at 5641.271 kb on - strand, within QEN71_RS25355 at 5641.271 kb on - strand, within QEN71_RS25355 at 5641.271 kb on - strand, within QEN71_RS25355 at 5641.271 kb on - strand, within QEN71_RS25355 at 5641.273 kb on + strand, within QEN71_RS25355 at 5641.273 kb on + strand, within QEN71_RS25355 at 5641.274 kb on - strand, within QEN71_RS25355 at 5641.381 kb on - strand, within QEN71_RS25355 at 5641.420 kb on + strand, within QEN71_RS25355 at 5641.579 kb on + strand, within QEN71_RS25355 at 5641.579 kb on + strand, within QEN71_RS25355 at 5641.579 kb on + strand, within QEN71_RS25355 at 5641.580 kb on - strand, within QEN71_RS25355 at 5641.713 kb on + strand, within QEN71_RS25355 at 5641.713 kb on + strand, within QEN71_RS25355 at 5641.714 kb on - strand, within QEN71_RS25355 at 5641.716 kb on + strand, within QEN71_RS25355 at 5641.860 kb on - strand at 5641.878 kb on + strand at 5641.879 kb on - strand at 5641.978 kb on + strand, within QEN71_RS25360 at 5641.979 kb on - strand, within QEN71_RS25360 at 5642.030 kb on + strand, within QEN71_RS25360 at 5642.171 kb on + strand, within QEN71_RS25360 at 5642.588 kb on - strand, within QEN71_RS25360 at 5642.772 kb on - strand at 5642.772 kb on - strand at 5642.802 kb on + strand at 5642.803 kb on - strand at 5642.872 kb on + strand at 5642.872 kb on + strand at 5642.901 kb on - strand at 5643.114 kb on + strand, within QEN71_RS25365 at 5643.159 kb on + strand, within QEN71_RS25365 at 5643.160 kb on - strand, within QEN71_RS25365 at 5643.160 kb on - strand, within QEN71_RS25365 at 5643.246 kb on + strand, within QEN71_RS25365 at 5643.246 kb on + strand, within QEN71_RS25365 at 5643.247 kb on - strand, within QEN71_RS25365 at 5643.247 kb on - strand, within QEN71_RS25365 at 5643.343 kb on - strand, within QEN71_RS25365 at 5643.343 kb on - strand, within QEN71_RS25365 at 5643.343 kb on - strand, within QEN71_RS25365 at 5643.345 kb on + strand, within QEN71_RS25365 at 5643.345 kb on + strand, within QEN71_RS25365 at 5643.345 kb on + strand, within QEN71_RS25365 at 5643.346 kb on - strand, within QEN71_RS25365 at 5643.346 kb on - strand, within QEN71_RS25365 at 5643.346 kb on - strand, within QEN71_RS25365
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 5,640,913 + -0.3 5,641,154 - -2.1 5,641,171 - -1.6 5,641,173 + -1.3 5,641,255 + QEN71_RS25355 0.16 -0.3 5,641,270 + QEN71_RS25355 0.18 +1.3 5,641,271 - QEN71_RS25355 0.18 +0.2 5,641,271 - QEN71_RS25355 0.18 -0.3 5,641,271 - QEN71_RS25355 0.18 -1.0 5,641,271 - QEN71_RS25355 0.18 +1.3 5,641,273 + QEN71_RS25355 0.19 +1.3 5,641,273 + QEN71_RS25355 0.19 -1.0 5,641,274 - QEN71_RS25355 0.19 -1.7 5,641,381 - QEN71_RS25355 0.34 -0.4 5,641,420 + QEN71_RS25355 0.40 +0.4 5,641,579 + QEN71_RS25355 0.63 -0.7 5,641,579 + QEN71_RS25355 0.63 -1.1 5,641,579 + QEN71_RS25355 0.63 -1.1 5,641,580 - QEN71_RS25355 0.63 -1.8 5,641,713 + QEN71_RS25355 0.82 -0.2 5,641,713 + QEN71_RS25355 0.82 -0.3 5,641,714 - QEN71_RS25355 0.82 +0.0 5,641,716 + QEN71_RS25355 0.83 -0.1 5,641,860 - +0.6 5,641,878 + -0.9 5,641,879 - -0.5 5,641,978 + QEN71_RS25360 0.12 -1.3 5,641,979 - QEN71_RS25360 0.12 -0.2 5,642,030 + QEN71_RS25360 0.18 +2.1 5,642,171 + QEN71_RS25360 0.34 -0.8 5,642,588 - QEN71_RS25360 0.81 -0.5 5,642,772 - +0.1 5,642,772 - -0.6 5,642,802 + +1.6 5,642,803 - +0.1 5,642,872 + -0.6 5,642,872 + +0.5 5,642,901 - -1.0 5,643,114 + QEN71_RS25365 0.19 +1.7 5,643,159 + QEN71_RS25365 0.25 -1.4 5,643,160 - QEN71_RS25365 0.25 +0.3 5,643,160 - QEN71_RS25365 0.25 -1.6 5,643,246 + QEN71_RS25365 0.35 -0.5 5,643,246 + QEN71_RS25365 0.35 -1.4 5,643,247 - QEN71_RS25365 0.36 -1.6 5,643,247 - QEN71_RS25365 0.36 -1.3 5,643,343 - QEN71_RS25365 0.48 +0.0 5,643,343 - QEN71_RS25365 0.48 -0.9 5,643,343 - QEN71_RS25365 0.48 +0.5 5,643,345 + QEN71_RS25365 0.48 -0.9 5,643,345 + QEN71_RS25365 0.48 -0.4 5,643,345 + QEN71_RS25365 0.48 +0.1 5,643,346 - QEN71_RS25365 0.48 -2.1 5,643,346 - QEN71_RS25365 0.48 -0.7 5,643,346 - QEN71_RS25365 0.48 +0.4
Or see this region's nucleotide sequence