Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21975

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
4,873,542	-				-0.3
4,873,542	-				-2.0
4,873,542	-				-0.3
4,873,544	+				-1.5
4,873,544	+				+0.3
4,873,544	+				-0.3
4,873,544	+				+0.5
4,873,544	+				-0.8
4,873,544	+				+0.3
4,873,544	+				+0.7
4,873,544	+				-1.8
4,873,545	-				+1.1
4,873,545	-				+1.2
4,873,545	-				-4.4
4,873,545	-				-1.5
4,873,545	-				+0.0
4,873,545	-				+0.5
4,873,545	-				+0.7
4,873,545	-				-0.4
4,873,589	-				+0.2
4,873,589	-				+0.1
4,873,589	-				+0.1
4,873,589	-				+1.6
4,873,684	-				-0.4
4,873,684	-				-0.8
4,873,684	-				-0.6
4,873,684	-				-0.2
4,873,684	-				-1.7
4,873,684	-				+0.4
4,873,684	-				-0.3
4,873,837	-				-0.5
4,873,837	-				+0.3
4,873,837	-				+2.3
4,873,837	-				-0.4
4,873,860	-				+0.5
4,873,860	-				-2.4
4,873,894	-		QEN71_RS21970	0.13	+1.6
4,874,124	+				-0.3
4,874,124	+				-0.6
4,874,125	-				+1.0
4,874,125	-				+0.5
4,874,125	-				+0.4
4,874,173	+				+0.4
4,874,185	+				-0.6
4,874,185	+				+0.7
4,874,185	+				+0.2
4,874,186	-				+0.5
4,874,187	+				-0.6
4,874,187	+				+2.6
4,874,187	+				+1.7
4,874,187	+				+0.9
4,874,187	+				+0.4
4,874,187	+				+2.0
4,874,187	+				+1.6
4,874,187	+				+0.6
4,874,187	+				+1.8
4,874,188	-				-0.2
4,874,188	-				-1.7
4,874,188	-				-1.2
4,874,188	-				-0.2
4,874,188	-				+0.2
4,874,188	-				-0.4
4,874,188	-				-0.4
4,874,188	-				+0.0
4,874,188	-				-2.7
4,874,189	+				+0.3
4,874,189	+				-0.8
4,874,190	-				-1.9
4,874,190	-				+0.0
4,874,190	-				+0.3
4,874,221	-				+0.1
4,874,221	-				+0.7
4,874,221	-				+0.4
4,874,221	-				+0.8
4,874,221	-				-0.4
4,874,221	-				-1.0
4,874,341	+				+0.3
4,874,341	+				-2.2
4,874,358	+				-0.3
4,874,365	+				-1.4
4,874,384	+				-0.0
4,874,384	+				+1.2
4,874,384	+				+0.5
4,874,384	+				-1.5
4,874,385	-				+0.2
4,874,385	-				+0.1
4,874,385	-				-1.0
4,874,385	-				-0.8
4,874,409	+				-1.3
4,874,418	-				-1.7
4,874,494	+				-0.8
4,874,494	+				-1.0
4,874,495	-				-1.5
4,874,495	-				-1.2
4,874,495	-				-1.1
4,874,495	-				-0.2
4,874,495	-				-0.3
4,874,495	-				-0.9
4,874,495	-				-0.8
4,874,503	-				+0.3
4,874,503	-				-1.0
4,875,155	-		QEN71_RS21975	0.27	-2.1
4,875,176	+		QEN71_RS21975	0.28	-0.3
4,875,177	-		QEN71_RS21975	0.28	-3.1
4,875,246	-		QEN71_RS21975	0.31	-2.2
4,875,301	+		QEN71_RS21975	0.33	-0.5
4,875,301	+		QEN71_RS21975	0.33	-1.0
4,875,302	-		QEN71_RS21975	0.33	-0.8
4,875,302	-		QEN71_RS21975	0.33	-0.5
4,875,302	-		QEN71_RS21975	0.33	-1.5
4,875,392	-		QEN71_RS21975	0.37	-3.3
4,875,392	-		QEN71_RS21975	0.37	-3.4
4,875,392	-		QEN71_RS21975	0.37	-0.7
4,875,539	-		QEN71_RS21975	0.43	-1.5
4,875,712	+		QEN71_RS21975	0.50	-0.3
4,875,712	+		QEN71_RS21975	0.50	-2.9
4,875,713	-		QEN71_RS21975	0.50	-2.6
4,875,713	-		QEN71_RS21975	0.50	-1.7
4,875,713	-		QEN71_RS21975	0.50	-1.3
4,875,717	-		QEN71_RS21975	0.51	-0.3
4,875,767	+		QEN71_RS21975	0.53	-2.4
4,875,768	-		QEN71_RS21975	0.53	-1.9
4,875,768	-		QEN71_RS21975	0.53	-2.1
4,875,821	+		QEN71_RS21975	0.55	+0.3
4,875,821	+		QEN71_RS21975	0.55	-0.5
4,875,821	+		QEN71_RS21975	0.55	-1.0
4,875,822	-		QEN71_RS21975	0.55	-2.4
4,875,896	-		QEN71_RS21975	0.58	-2.3
4,876,028	+		QEN71_RS21975	0.63	-0.7
4,876,217	-		QEN71_RS21975	0.71	-0.3
4,876,217	-		QEN71_RS21975	0.71	-1.6
4,876,219	+		QEN71_RS21975	0.71	-1.0
4,876,219	+		QEN71_RS21975	0.71	-1.3
4,876,220	-		QEN71_RS21975	0.71	-2.7
4,876,220	-		QEN71_RS21975	0.71	-0.8
4,876,220	-		QEN71_RS21975	0.71	-3.2
4,876,481	-		QEN71_RS21975	0.82	-3.3
4,876,481	-		QEN71_RS21975	0.82	-2.8
4,876,481	-		QEN71_RS21975	0.82	-1.0
4,876,481	-		QEN71_RS21975	0.82	-0.8
4,876,696	+				+0.0
4,876,696	+				-1.6
4,876,696	+				+0.3
4,876,696	+				-1.1
4,876,697	-				-2.1
4,876,697	-				-1.4
4,876,697	-				-1.4
4,876,846	-				+0.3
4,876,846	-				-1.5
4,876,945	+				-2.1
4,876,945	+				-4.4
4,876,945	+				-1.8
4,876,946	-				+0.1
4,876,946	-				+0.2
4,876,946	-				+0.0
4,876,946	-				-0.5
4,876,946	-				+0.3
4,876,946	-				+0.4
4,877,034	+				+0.3
4,877,035	-				-0.7
4,877,129	+				-1.3
4,877,129	+				-1.6
4,877,129	+				-1.9
4,877,129	+				-1.9
4,877,130	-				-0.8
4,877,130	-				-2.2
4,877,130	-				-0.8
4,877,130	-				-3.1
4,877,130	-				+2.6
4,877,130	-				+0.0
4,877,138	-				-1.8
4,877,213	+				-0.3
4,877,213	+				-2.1
4,877,213	+				+0.0
4,877,213	+				+0.3
4,877,213	+				-1.0
4,877,213	+				-0.5
4,877,214	-				-1.1
4,877,214	-				+0.0
4,877,214	-				+0.0
4,877,214	-				-0.7
4,877,214	-				-0.3
4,877,214	-				+0.0
4,877,357	+		QEN71_RS21980	0.21	+0.3
4,877,358	-		QEN71_RS21980	0.21	+0.3
4,877,358	-		QEN71_RS21980	0.21	-1.0
4,877,358	-		QEN71_RS21980	0.21	-0.7
4,877,358	-		QEN71_RS21980	0.21	+0.0
4,877,578	-		QEN71_RS21980	0.38	-1.3
4,877,815	-		QEN71_RS21980	0.57	-0.8
4,877,815	-		QEN71_RS21980	0.57	+0.0
4,877,815	-		QEN71_RS21980	0.57	+0.3
4,877,816	+		QEN71_RS21980	0.57	+0.0
4,877,817	-		QEN71_RS21980	0.57	+0.0
4,877,817	-		QEN71_RS21980	0.57	-1.4
4,877,817	-		QEN71_RS21980	0.57	+0.0
4,877,817	-		QEN71_RS21980	0.57	-1.0
4,877,817	-		QEN71_RS21980	0.57	-1.7
4,877,817	-		QEN71_RS21980	0.57	-0.5
4,877,817	-		QEN71_RS21980	0.57	+0.3
4,877,817	-		QEN71_RS21980	0.57	-0.3
4,877,850	-		QEN71_RS21980	0.59	-0.3
4,877,850	-		QEN71_RS21980	0.59	+0.3
4,877,850	-		QEN71_RS21980	0.59	-0.5
4,877,850	-		QEN71_RS21980	0.59	-0.7
4,877,903	+		QEN71_RS21980	0.64	-0.8
4,877,903	+		QEN71_RS21980	0.64	+0.3
4,877,904	-		QEN71_RS21980	0.64	+0.0