Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21405

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21395 and QEN71_RS21400 are separated by 72 nucleotidesQEN71_RS21400 and QEN71_RS21405 are separated by 46 nucleotidesQEN71_RS21405 and QEN71_RS21410 are separated by 9 nucleotides QEN71_RS21395: QEN71_RS21395 - poly-beta-1,6-N-acetyl-D-glucosamine synthase, at 4,742,583 to 4,743,884 _RS21395 QEN71_RS21400: QEN71_RS21400 - hypothetical protein, at 4,743,957 to 4,744,412 _RS21400 QEN71_RS21405: QEN71_RS21405 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 4,744,459 to 4,746,288 _RS21405 QEN71_RS21410: QEN71_RS21410 - hypothetical protein, at 4,746,298 to 4,747,524 _RS21410 Position (kb) 4744 4745 4746 4747Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4743.491 kb on - strand, within QEN71_RS21395at 4743.676 kb on - strand, within QEN71_RS21395at 4744.104 kb on + strand, within QEN71_RS21400at 4744.104 kb on + strand, within QEN71_RS21400at 4744.473 kb on - strandat 4744.473 kb on - strandat 4744.473 kb on - strandat 4744.543 kb on + strandat 4745.029 kb on + strand, within QEN71_RS21405at 4745.029 kb on + strand, within QEN71_RS21405at 4745.029 kb on + strand, within QEN71_RS21405at 4745.219 kb on - strand, within QEN71_RS21405at 4745.368 kb on + strand, within QEN71_RS21405at 4745.368 kb on + strand, within QEN71_RS21405at 4745.693 kb on + strand, within QEN71_RS21405at 4745.693 kb on + strand, within QEN71_RS21405at 4745.695 kb on + strand, within QEN71_RS21405at 4745.695 kb on + strand, within QEN71_RS21405at 4745.696 kb on - strand, within QEN71_RS21405at 4745.796 kb on + strand, within QEN71_RS21405at 4745.797 kb on - strand, within QEN71_RS21405at 4745.932 kb on + strand, within QEN71_RS21405at 4745.933 kb on - strand, within QEN71_RS21405at 4745.933 kb on - strand, within QEN71_RS21405at 4746.164 kb on - strandat 4746.436 kb on + strand, within QEN71_RS21410at 4746.436 kb on + strand, within QEN71_RS21410at 4746.436 kb on + strand, within QEN71_RS21410at 4746.436 kb on + strand, within QEN71_RS21410at 4746.437 kb on - strand, within QEN71_RS21410at 4746.437 kb on - strand, within QEN71_RS21410at 4746.437 kb on - strand, within QEN71_RS21410at 4746.437 kb on - strand, within QEN71_RS21410at 4746.553 kb on + strand, within QEN71_RS21410at 4746.554 kb on - strand, within QEN71_RS21410at 4746.554 kb on - strand, within QEN71_RS21410at 4746.554 kb on - strand, within QEN71_RS21410at 4746.554 kb on - strand, within QEN71_RS21410at 4746.554 kb on - strand, within QEN71_RS21410at 4746.727 kb on + strand, within QEN71_RS21410at 4746.727 kb on + strand, within QEN71_RS21410at 4746.728 kb on - strand, within QEN71_RS21410at 4746.728 kb on - strand, within QEN71_RS21410at 4746.728 kb on - strand, within QEN71_RS21410at 4746.729 kb on + strand, within QEN71_RS21410at 4746.729 kb on + strand, within QEN71_RS21410at 4746.729 kb on + strand, within QEN71_RS21410at 4746.729 kb on + strand, within QEN71_RS21410at 4746.730 kb on - strand, within QEN71_RS21410at 4746.730 kb on - strand, within QEN71_RS21410at 4746.730 kb on - strand, within QEN71_RS21410at 4746.730 kb on - strand, within QEN71_RS21410at 4746.730 kb on - strand, within QEN71_RS21410at 4746.829 kb on + strand, within QEN71_RS21410at 4746.829 kb on + strand, within QEN71_RS21410at 4746.889 kb on + strand, within QEN71_RS21410at 4746.902 kb on - strand, within QEN71_RS21410at 4747.012 kb on + strand, within QEN71_RS21410at 4747.012 kb on + strand, within QEN71_RS21410at 4747.012 kb on + strand, within QEN71_RS21410at 4747.013 kb on - strand, within QEN71_RS21410at 4747.013 kb on - strand, within QEN71_RS21410at 4747.013 kb on - strand, within QEN71_RS21410at 4747.013 kb on - strand, within QEN71_RS21410at 4747.030 kb on + strand, within QEN71_RS21410at 4747.030 kb on + strand, within QEN71_RS21410at 4747.030 kb on + strand, within QEN71_RS21410at 4747.030 kb on + strand, within QEN71_RS21410at 4747.031 kb on - strand, within QEN71_RS21410at 4747.031 kb on - strand, within QEN71_RS21410at 4747.031 kb on - strand, within QEN71_RS21410at 4747.031 kb on - strand, within QEN71_RS21410at 4747.111 kb on + strand, within QEN71_RS21410at 4747.111 kb on + strand, within QEN71_RS21410at 4747.112 kb on - strand, within QEN71_RS21410at 4747.114 kb on + strand, within QEN71_RS21410at 4747.114 kb on + strand, within QEN71_RS21410at 4747.115 kb on - strand, within QEN71_RS21410at 4747.120 kb on + strand, within QEN71_RS21410at 4747.120 kb on + strand, within QEN71_RS21410at 4747.132 kb on + strand, within QEN71_RS21410at 4747.132 kb on + strand, within QEN71_RS21410at 4747.132 kb on + strand, within QEN71_RS21410at 4747.132 kb on + strand, within QEN71_RS21410at 4747.133 kb on - strand, within QEN71_RS21410at 4747.133 kb on - strand, within QEN71_RS21410

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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4,743,491 - QEN71_RS21395 0.70 -0.3
4,743,676 - QEN71_RS21395 0.84 -0.3
4,744,104 + QEN71_RS21400 0.32 -0.9
4,744,104 + QEN71_RS21400 0.32 -0.3
4,744,473 - -0.6
4,744,473 - -0.9
4,744,473 - +0.7
4,744,543 + +0.0
4,745,029 + QEN71_RS21405 0.31 -0.3
4,745,029 + QEN71_RS21405 0.31 +1.7
4,745,029 + QEN71_RS21405 0.31 -1.0
4,745,219 - QEN71_RS21405 0.42 +0.3
4,745,368 + QEN71_RS21405 0.50 +0.6
4,745,368 + QEN71_RS21405 0.50 +0.4
4,745,693 + QEN71_RS21405 0.67 -2.6
4,745,693 + QEN71_RS21405 0.67 +0.2
4,745,695 + QEN71_RS21405 0.68 -0.5
4,745,695 + QEN71_RS21405 0.68 +0.8
4,745,696 - QEN71_RS21405 0.68 -1.4
4,745,796 + QEN71_RS21405 0.73 -0.1
4,745,797 - QEN71_RS21405 0.73 -0.7
4,745,932 + QEN71_RS21405 0.80 -0.4
4,745,933 - QEN71_RS21405 0.81 -0.2
4,745,933 - QEN71_RS21405 0.81 +2.2
4,746,164 - -0.0
4,746,436 + QEN71_RS21410 0.11 +1.2
4,746,436 + QEN71_RS21410 0.11 +1.3
4,746,436 + QEN71_RS21410 0.11 -0.1
4,746,436 + QEN71_RS21410 0.11 +1.5
4,746,437 - QEN71_RS21410 0.11 -1.4
4,746,437 - QEN71_RS21410 0.11 -0.9
4,746,437 - QEN71_RS21410 0.11 -0.2
4,746,437 - QEN71_RS21410 0.11 -0.6
4,746,553 + QEN71_RS21410 0.21 +0.3
4,746,554 - QEN71_RS21410 0.21 -0.8
4,746,554 - QEN71_RS21410 0.21 -0.3
4,746,554 - QEN71_RS21410 0.21 -0.7
4,746,554 - QEN71_RS21410 0.21 +2.6
4,746,554 - QEN71_RS21410 0.21 +0.3
4,746,727 + QEN71_RS21410 0.35 -1.0
4,746,727 + QEN71_RS21410 0.35 +0.4
4,746,728 - QEN71_RS21410 0.35 +1.3
4,746,728 - QEN71_RS21410 0.35 -0.4
4,746,728 - QEN71_RS21410 0.35 +0.2
4,746,729 + QEN71_RS21410 0.35 -0.6
4,746,729 + QEN71_RS21410 0.35 +0.3
4,746,729 + QEN71_RS21410 0.35 -1.3
4,746,729 + QEN71_RS21410 0.35 -1.3
4,746,730 - QEN71_RS21410 0.35 +0.1
4,746,730 - QEN71_RS21410 0.35 -0.4
4,746,730 - QEN71_RS21410 0.35 +0.7
4,746,730 - QEN71_RS21410 0.35 -0.0
4,746,730 - QEN71_RS21410 0.35 -1.0
4,746,829 + QEN71_RS21410 0.43 -0.3
4,746,829 + QEN71_RS21410 0.43 -0.5
4,746,889 + QEN71_RS21410 0.48 +0.5
4,746,902 - QEN71_RS21410 0.49 -0.9
4,747,012 + QEN71_RS21410 0.58 +0.8
4,747,012 + QEN71_RS21410 0.58 +1.6
4,747,012 + QEN71_RS21410 0.58 +0.9
4,747,013 - QEN71_RS21410 0.58 -0.7
4,747,013 - QEN71_RS21410 0.58 -1.3
4,747,013 - QEN71_RS21410 0.58 -1.2
4,747,013 - QEN71_RS21410 0.58 -1.3
4,747,030 + QEN71_RS21410 0.60 +0.1
4,747,030 + QEN71_RS21410 0.60 +1.3
4,747,030 + QEN71_RS21410 0.60 +1.3
4,747,030 + QEN71_RS21410 0.60 -1.6
4,747,031 - QEN71_RS21410 0.60 +0.3
4,747,031 - QEN71_RS21410 0.60 -1.7
4,747,031 - QEN71_RS21410 0.60 -0.2
4,747,031 - QEN71_RS21410 0.60 +1.0
4,747,111 + QEN71_RS21410 0.66 +1.2
4,747,111 + QEN71_RS21410 0.66 -1.0
4,747,112 - QEN71_RS21410 0.66 -3.0
4,747,114 + QEN71_RS21410 0.67 -1.5
4,747,114 + QEN71_RS21410 0.67 -0.3
4,747,115 - QEN71_RS21410 0.67 -0.0
4,747,120 + QEN71_RS21410 0.67 -0.9
4,747,120 + QEN71_RS21410 0.67 +0.5
4,747,132 + QEN71_RS21410 0.68 -0.3
4,747,132 + QEN71_RS21410 0.68 -1.5
4,747,132 + QEN71_RS21410 0.68 -2.5
4,747,132 + QEN71_RS21410 0.68 -0.5
4,747,133 - QEN71_RS21410 0.68 -1.8
4,747,133 - QEN71_RS21410 0.68 +0.7

Or see this region's nucleotide sequence