Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS20935 and QEN71_RS20940 are separated by 111 nucleotides QEN71_RS20940 and QEN71_RS20945 are separated by 27 nucleotides QEN71_RS20945 and QEN71_RS20950 are separated by 12 nucleotides QEN71_RS20950 and QEN71_RS20955 are separated by 12 nucleotides
QEN71_RS20935: QEN71_RS20935 - sorbosone dehydrogenase family protein, at 4,643,180 to 4,644,499
_RS20935
QEN71_RS20940: QEN71_RS20940 - GNAT family N-acetyltransferase, at 4,644,611 to 4,645,153
_RS20940
QEN71_RS20945: QEN71_RS20945 - hypothetical protein, at 4,645,181 to 4,645,321
_RS20945
QEN71_RS20950: QEN71_RS20950 - sensor histidine kinase, at 4,645,334 to 4,645,630
_RS20950
QEN71_RS20955: QEN71_RS20955 - dihydrofolate reductase family protein, at 4,645,643 to 4,646,260
_RS20955
Position (kb) 4645
4646 Strain fitness (log2 ratio) -1
0
1 at 4644.215 kb on + strand, within QEN71_RS20935 at 4644.216 kb on - strand, within QEN71_RS20935 at 4644.227 kb on - strand, within QEN71_RS20935 at 4644.227 kb on - strand, within QEN71_RS20935 at 4644.315 kb on - strand, within QEN71_RS20935 at 4644.398 kb on + strand at 4644.498 kb on - strand at 4644.550 kb on - strand at 4644.561 kb on + strand at 4644.562 kb on - strand at 4644.576 kb on + strand at 4644.576 kb on + strand at 4644.577 kb on - strand at 4644.836 kb on + strand, within QEN71_RS20940 at 4644.992 kb on + strand, within QEN71_RS20940 at 4644.993 kb on - strand, within QEN71_RS20940 at 4645.015 kb on + strand, within QEN71_RS20940 at 4645.072 kb on + strand, within QEN71_RS20940 at 4645.072 kb on + strand, within QEN71_RS20940 at 4645.072 kb on + strand, within QEN71_RS20940 at 4645.072 kb on + strand, within QEN71_RS20940 at 4645.072 kb on + strand, within QEN71_RS20940 at 4645.072 kb on + strand, within QEN71_RS20940 at 4645.072 kb on + strand, within QEN71_RS20940 at 4645.072 kb on + strand, within QEN71_RS20940 at 4645.073 kb on - strand, within QEN71_RS20940 at 4645.073 kb on - strand, within QEN71_RS20940 at 4645.073 kb on - strand, within QEN71_RS20940 at 4645.073 kb on - strand, within QEN71_RS20940 at 4645.073 kb on - strand, within QEN71_RS20940 at 4645.222 kb on + strand, within QEN71_RS20945 at 4645.306 kb on + strand, within QEN71_RS20945 at 4645.306 kb on + strand, within QEN71_RS20945 at 4645.481 kb on + strand, within QEN71_RS20950 at 4645.781 kb on + strand, within QEN71_RS20955 at 4645.794 kb on + strand, within QEN71_RS20955 at 4645.795 kb on - strand, within QEN71_RS20955 at 4646.037 kb on - strand, within QEN71_RS20955 at 4646.068 kb on - strand, within QEN71_RS20955 at 4646.068 kb on - strand, within QEN71_RS20955 at 4646.146 kb on - strand, within QEN71_RS20955 at 4646.185 kb on + strand, within QEN71_RS20955 at 4646.186 kb on - strand, within QEN71_RS20955 at 4646.275 kb on + strand at 4646.276 kb on - strand at 4646.276 kb on - strand at 4646.294 kb on + strand at 4646.295 kb on - strand at 4646.295 kb on - strand at 4646.295 kb on - strand at 4646.295 kb on - strand at 4646.298 kb on + strand at 4646.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 4,644,215 + QEN71_RS20935 0.78 -0.5 4,644,216 - QEN71_RS20935 0.78 +0.3 4,644,227 - QEN71_RS20935 0.79 -1.0 4,644,227 - QEN71_RS20935 0.79 -1.6 4,644,315 - QEN71_RS20935 0.86 +0.2 4,644,398 + -1.4 4,644,498 - -0.3 4,644,550 - -0.7 4,644,561 + +0.3 4,644,562 - +0.6 4,644,576 + -0.6 4,644,576 + +0.3 4,644,577 - -0.3 4,644,836 + QEN71_RS20940 0.41 +0.7 4,644,992 + QEN71_RS20940 0.70 -1.5 4,644,993 - QEN71_RS20940 0.70 -0.9 4,645,015 + QEN71_RS20940 0.74 +0.5 4,645,072 + QEN71_RS20940 0.85 -0.1 4,645,072 + QEN71_RS20940 0.85 +0.0 4,645,072 + QEN71_RS20940 0.85 +0.3 4,645,072 + QEN71_RS20940 0.85 +0.9 4,645,072 + QEN71_RS20940 0.85 +1.2 4,645,072 + QEN71_RS20940 0.85 +0.7 4,645,072 + QEN71_RS20940 0.85 +0.3 4,645,072 + QEN71_RS20940 0.85 -0.1 4,645,073 - QEN71_RS20940 0.85 -0.6 4,645,073 - QEN71_RS20940 0.85 -0.4 4,645,073 - QEN71_RS20940 0.85 +0.9 4,645,073 - QEN71_RS20940 0.85 -0.1 4,645,073 - QEN71_RS20940 0.85 -0.6 4,645,222 + QEN71_RS20945 0.29 +0.3 4,645,306 + QEN71_RS20945 0.89 -1.0 4,645,306 + QEN71_RS20945 0.89 -0.4 4,645,481 + QEN71_RS20950 0.49 +0.3 4,645,781 + QEN71_RS20955 0.22 +0.3 4,645,794 + QEN71_RS20955 0.24 +0.5 4,645,795 - QEN71_RS20955 0.25 +0.1 4,646,037 - QEN71_RS20955 0.64 -0.5 4,646,068 - QEN71_RS20955 0.69 -0.7 4,646,068 - QEN71_RS20955 0.69 +0.2 4,646,146 - QEN71_RS20955 0.81 +0.3 4,646,185 + QEN71_RS20955 0.88 -0.1 4,646,186 - QEN71_RS20955 0.88 +1.0 4,646,275 + -1.7 4,646,276 - +0.5 4,646,276 - -0.8 4,646,294 + -0.3 4,646,295 - -0.9 4,646,295 - -0.1 4,646,295 - -0.9 4,646,295 - +0.7 4,646,298 + +0.4 4,646,298 + -0.6
Or see this region's nucleotide sequence