Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS19155 and QEN71_RS19160 overlap by 4 nucleotides QEN71_RS19160 and QEN71_RS19165 are separated by 64 nucleotides
QEN71_RS19155: QEN71_RS19155 - glycosyltransferase family 9 protein, at 4,259,280 to 4,260,485
_RS19155
QEN71_RS19160: QEN71_RS19160 - HAD family hydrolase, at 4,260,482 to 4,261,102
_RS19160
QEN71_RS19165: QEN71_RS19165 - glycosyltransferase family 1 protein, at 4,261,167 to 4,262,459
_RS19165
Position (kb) 4260
4261
4262 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4259.515 kb on + strand, within QEN71_RS19155 at 4260.113 kb on - strand, within QEN71_RS19155 at 4260.203 kb on + strand, within QEN71_RS19155 at 4260.204 kb on - strand, within QEN71_RS19155 at 4260.204 kb on - strand, within QEN71_RS19155 at 4260.780 kb on + strand, within QEN71_RS19160 at 4260.819 kb on + strand, within QEN71_RS19160 at 4261.022 kb on - strand, within QEN71_RS19160 at 4261.022 kb on - strand, within QEN71_RS19160 at 4261.023 kb on + strand, within QEN71_RS19160 at 4261.023 kb on + strand, within QEN71_RS19160 at 4261.023 kb on + strand, within QEN71_RS19160 at 4261.023 kb on + strand, within QEN71_RS19160 at 4261.024 kb on - strand, within QEN71_RS19160 at 4261.255 kb on + strand at 4261.256 kb on - strand at 4261.256 kb on - strand at 4261.256 kb on - strand at 4261.256 kb on - strand at 4261.555 kb on + strand, within QEN71_RS19165 at 4261.555 kb on + strand, within QEN71_RS19165 at 4261.556 kb on - strand, within QEN71_RS19165 at 4261.699 kb on + strand, within QEN71_RS19165 at 4261.700 kb on - strand, within QEN71_RS19165 at 4261.700 kb on - strand, within QEN71_RS19165 at 4261.700 kb on - strand, within QEN71_RS19165 at 4261.700 kb on - strand, within QEN71_RS19165 at 4261.918 kb on + strand, within QEN71_RS19165 at 4262.079 kb on + strand, within QEN71_RS19165
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 4,259,515 + QEN71_RS19155 0.19 -2.2 4,260,113 - QEN71_RS19155 0.69 -0.2 4,260,203 + QEN71_RS19155 0.77 +1.3 4,260,204 - QEN71_RS19155 0.77 -0.2 4,260,204 - QEN71_RS19155 0.77 +0.1 4,260,780 + QEN71_RS19160 0.48 +0.4 4,260,819 + QEN71_RS19160 0.54 +0.2 4,261,022 - QEN71_RS19160 0.87 +1.2 4,261,022 - QEN71_RS19160 0.87 -1.8 4,261,023 + QEN71_RS19160 0.87 +0.7 4,261,023 + QEN71_RS19160 0.87 +0.0 4,261,023 + QEN71_RS19160 0.87 +2.0 4,261,023 + QEN71_RS19160 0.87 -0.4 4,261,024 - QEN71_RS19160 0.87 +0.3 4,261,255 + +1.5 4,261,256 - +0.9 4,261,256 - -0.9 4,261,256 - +0.9 4,261,256 - +0.8 4,261,555 + QEN71_RS19165 0.30 -0.9 4,261,555 + QEN71_RS19165 0.30 +0.4 4,261,556 - QEN71_RS19165 0.30 +0.5 4,261,699 + QEN71_RS19165 0.41 -1.2 4,261,700 - QEN71_RS19165 0.41 +1.3 4,261,700 - QEN71_RS19165 0.41 -2.4 4,261,700 - QEN71_RS19165 0.41 +0.2 4,261,700 - QEN71_RS19165 0.41 +1.8 4,261,918 + QEN71_RS19165 0.58 -0.6 4,262,079 + QEN71_RS19165 0.71 +2.2
Or see this region's nucleotide sequence