Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS16730

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
3,705,422	+		QEN71_RS16725	0.39	-0.4
3,705,515	+		QEN71_RS16725	0.48	-0.7
3,705,515	+		QEN71_RS16725	0.48	-1.8
3,705,515	+		QEN71_RS16725	0.48	-0.3
3,705,515	+		QEN71_RS16725	0.48	+0.5
3,705,515	+		QEN71_RS16725	0.48	-1.2
3,705,515	+		QEN71_RS16725	0.48	-0.9
3,705,515	+		QEN71_RS16725	0.48	+0.2
3,705,515	+		QEN71_RS16725	0.48	+1.0
3,705,515	+		QEN71_RS16725	0.48	-0.1
3,705,515	+		QEN71_RS16725	0.48	-0.7
3,705,515	+		QEN71_RS16725	0.48	+0.2
3,705,515	+		QEN71_RS16725	0.48	+1.5
3,705,516	-		QEN71_RS16725	0.48	-0.9
3,705,516	-		QEN71_RS16725	0.48	-0.4
3,705,516	-		QEN71_RS16725	0.48	-1.0
3,705,516	-		QEN71_RS16725	0.48	+1.1
3,705,516	-		QEN71_RS16725	0.48	-0.0
3,705,516	-		QEN71_RS16725	0.48	-1.7
3,705,516	-		QEN71_RS16725	0.48	+0.8
3,705,516	-		QEN71_RS16725	0.48	+1.3
3,705,516	-		QEN71_RS16725	0.48	+0.1
3,705,516	-		QEN71_RS16725	0.48	-1.1
3,705,516	-		QEN71_RS16725	0.48	-1.7
3,705,517	+		QEN71_RS16725	0.48	-0.2
3,705,517	+		QEN71_RS16725	0.48	-1.3
3,705,518	-		QEN71_RS16725	0.48	-0.0
3,705,518	-		QEN71_RS16725	0.48	-0.2
3,705,561	-		QEN71_RS16725	0.52	-2.2
3,705,625	+		QEN71_RS16725	0.57	-2.1
3,705,625	+		QEN71_RS16725	0.57	-0.9
3,705,626	-		QEN71_RS16725	0.58	+0.0
3,705,626	-		QEN71_RS16725	0.58	-0.6
3,705,732	-		QEN71_RS16725	0.67	+0.6
3,705,732	-		QEN71_RS16725	0.67	+0.4
3,705,732	-		QEN71_RS16725	0.67	+0.3
3,705,770	+		QEN71_RS16725	0.70	+0.3
3,705,770	+		QEN71_RS16725	0.70	-0.9
3,705,770	+		QEN71_RS16725	0.70	-0.3
3,705,771	-		QEN71_RS16725	0.71	-0.9
3,705,771	-		QEN71_RS16725	0.71	-2.0
3,705,779	+		QEN71_RS16725	0.71	+0.8
3,705,779	+		QEN71_RS16725	0.71	+0.2
3,705,863	+		QEN71_RS16725	0.79	+1.5
3,705,863	+		QEN71_RS16725	0.79	+3.7
3,705,863	+		QEN71_RS16725	0.79	+0.4
3,705,863	+		QEN71_RS16725	0.79	-1.0
3,705,863	+		QEN71_RS16725	0.79	+0.7
3,705,863	+		QEN71_RS16725	0.79	+2.1
3,705,863	+		QEN71_RS16725	0.79	+0.1
3,705,864	-		QEN71_RS16725	0.79	-0.5
3,705,864	-		QEN71_RS16725	0.79	+0.5
3,705,864	-		QEN71_RS16725	0.79	-0.6
3,705,864	-		QEN71_RS16725	0.79	-0.2
3,705,864	-		QEN71_RS16725	0.79	-0.9
3,706,001	+				-0.8
3,706,001	+				+0.9
3,706,001	+				-0.9
3,706,001	+				+1.0
3,706,001	+				-0.2
3,706,001	+				+0.9
3,706,001	+				-1.5
3,706,001	+				+0.1
3,706,001	+				+0.7
3,706,001	+				+0.3
3,706,001	+				+0.7
3,706,001	+				+0.2
3,706,001	+				+0.5
3,706,001	+				+0.2
3,706,001	+				+0.2
3,706,001	+				-1.2
3,706,001	+				-0.4
3,706,002	-				-0.9
3,706,002	-				-2.4
3,706,002	-				+0.5
3,706,002	-				-1.3
3,706,002	-				-0.9
3,706,002	-				-0.5
3,706,002	-				+0.5
3,706,002	-				-0.4
3,706,002	-				-2.0
3,706,002	-				-1.2
3,706,003	+				-0.5
3,706,003	+				-0.4
3,706,003	+				-0.4
3,706,003	+				-1.6
3,706,004	-				-0.9
3,706,063	+				+0.5
3,706,063	+				-0.2
3,706,063	+				-0.9
3,706,063	+				+0.8
3,706,064	-				-1.7
3,706,064	-				-0.5
3,706,140	+				-0.8
3,706,140	+				-1.8
3,706,141	-				-0.2
3,706,141	-				-0.0
3,706,179	-				-0.2
3,706,179	-				-0.1
3,706,187	-				+7.3
3,706,187	-				+0.1
3,706,246	+				-1.2
3,706,246	+				+0.3
3,706,246	+				-2.7
3,706,246	+				-0.2
3,706,247	-				-0.3
3,706,247	-				+1.5
3,706,342	-		QEN71_RS16730	0.11	-1.4
3,706,683	+		QEN71_RS16730	0.53	-1.1
3,706,683	+		QEN71_RS16730	0.53	-0.5
3,706,683	+		QEN71_RS16730	0.53	+0.1
3,706,683	+		QEN71_RS16730	0.53	-1.2
3,706,684	-		QEN71_RS16730	0.53	-1.2
3,706,684	-		QEN71_RS16730	0.53	-0.3
3,706,820	+		QEN71_RS16730	0.70	-0.7
3,706,821	-		QEN71_RS16730	0.70	+1.9
3,706,821	-		QEN71_RS16730	0.70	+0.5
3,706,821	-		QEN71_RS16730	0.70	+1.1
3,706,904	-		QEN71_RS16730	0.80	-1.3
3,706,904	-		QEN71_RS16730	0.80	+0.5
3,706,959	+		QEN71_RS16730	0.87	-2.1
3,706,987	-				+0.6
3,707,068	+				+1.4
3,707,068	+				-0.3
3,707,069	-				+0.4
3,707,069	-				-0.6
3,707,069	-				-0.0
3,707,069	-				+1.8
3,707,085	+				-0.3
3,707,085	+				-1.3
3,707,085	+				-0.8
3,707,085	+				-2.3
3,707,085	+				+0.3
3,707,085	+				+0.5
3,707,085	+				-0.9
3,707,085	+				+0.1
3,707,085	+				-0.5
3,707,085	+				-1.3
3,707,085	+				+1.3
3,707,086	-				+0.3
3,707,086	-				-0.5
3,707,086	-				-1.5
3,707,086	-				+0.5
3,707,086	-				-0.3
3,707,086	-				+0.1
3,707,086	-				-0.5
3,707,086	-				-1.3
3,707,129	+				+0.9
3,707,129	+				+2.5
3,707,129	+				+1.5
3,707,129	+				-0.6
3,707,129	+				-1.0
3,707,129	+				-1.0
3,707,130	-				+0.1
3,707,130	-				-1.7
3,707,130	-				+0.8
3,707,137	+				+1.1
3,707,137	+				+0.8
3,707,137	+				+1.3
3,707,137	+				-1.1
3,707,137	+				+0.0
3,707,137	+				-2.5
3,707,138	-				+1.2
3,707,159	+				-1.2
3,707,298	+		QEN71_RS16735	0.11	+1.0
3,707,299	-		QEN71_RS16735	0.11	+0.8
3,707,299	-		QEN71_RS16735	0.11	-1.3
3,707,562	+		QEN71_RS16735	0.39	-1.1
3,707,562	+		QEN71_RS16735	0.39	-1.3
3,707,562	+		QEN71_RS16735	0.39	-0.3
3,707,562	+		QEN71_RS16735	0.39	+0.1
3,707,563	-		QEN71_RS16735	0.39	-0.2
3,707,563	-		QEN71_RS16735	0.39	-0.3
3,707,563	-		QEN71_RS16735	0.39	-0.5
3,707,563	-		QEN71_RS16735	0.39	+0.4
3,707,563	-		QEN71_RS16735	0.39	+0.1
3,707,563	-		QEN71_RS16735	0.39	+0.4
3,707,565	+		QEN71_RS16735	0.39	-0.2
3,707,566	-		QEN71_RS16735	0.39	-0.3
3,707,566	-		QEN71_RS16735	0.39	-2.3
3,707,566	-		QEN71_RS16735	0.39	-0.5
3,707,566	-		QEN71_RS16735	0.39	+0.5
3,707,566	-		QEN71_RS16735	0.39	-0.2
3,707,589	+		QEN71_RS16735	0.42	-1.9
3,707,590	-		QEN71_RS16735	0.42	+0.5
3,707,748	+		QEN71_RS16735	0.59	+0.4
3,707,748	+		QEN71_RS16735	0.59	+1.1
3,707,748	+		QEN71_RS16735	0.59	-1.0
3,707,748	+		QEN71_RS16735	0.59	+0.1
3,707,749	-		QEN71_RS16735	0.59	-0.0
3,707,749	-		QEN71_RS16735	0.59	+0.7
3,707,749	-		QEN71_RS16735	0.59	-0.5
3,707,749	-		QEN71_RS16735	0.59	-1.7
3,707,835	+		QEN71_RS16735	0.68	+0.1
3,707,835	+		QEN71_RS16735	0.68	-0.2
3,707,836	-		QEN71_RS16735	0.68	-0.3
3,707,836	-		QEN71_RS16735	0.68	+0.3