Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02160

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02150 and QEN71_RS02155 are separated by 37 nucleotidesQEN71_RS02155 and QEN71_RS02160 are separated by 10 nucleotidesQEN71_RS02160 and QEN71_RS02165 are separated by 15 nucleotides QEN71_RS02150: QEN71_RS02150 - lysophospholipid acyltransferase family protein, at 482,392 to 483,150 _RS02150 QEN71_RS02155: QEN71_RS02155 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 483,188 to 483,745 _RS02155 QEN71_RS02160: QEN71_RS02160 - glycine--tRNA ligase subunit beta, at 483,756 to 485,855 _RS02160 QEN71_RS02165: QEN71_RS02165 - glycine--tRNA ligase subunit alpha, at 485,871 to 486,878 _RS02165 Position (kb) 483 484 485 486Strain fitness (log2 ratio) -2 -1 0 1at 482.837 kb on + strand, within QEN71_RS02150at 482.838 kb on - strand, within QEN71_RS02150at 482.838 kb on - strand, within QEN71_RS02150at 482.838 kb on - strand, within QEN71_RS02150at 482.861 kb on + strand, within QEN71_RS02150at 482.861 kb on + strand, within QEN71_RS02150at 482.862 kb on - strand, within QEN71_RS02150at 482.862 kb on - strand, within QEN71_RS02150at 482.862 kb on - strand, within QEN71_RS02150at 483.179 kb on + strandat 483.179 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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482,837 + QEN71_RS02150 0.59 +0.4
482,838 - QEN71_RS02150 0.59 -0.8
482,838 - QEN71_RS02150 0.59 -0.4
482,838 - QEN71_RS02150 0.59 +0.4
482,861 + QEN71_RS02150 0.62 -1.9
482,861 + QEN71_RS02150 0.62 -0.6
482,862 - QEN71_RS02150 0.62 +0.4
482,862 - QEN71_RS02150 0.62 -2.2
482,862 - QEN71_RS02150 0.62 -1.0
483,179 + -1.2
483,179 + +0.4

Or see this region's nucleotide sequence