Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS01755 and QEN71_RS01760 are separated by 229 nucleotides QEN71_RS01760 and QEN71_RS01765 overlap by 4 nucleotides QEN71_RS01765 and QEN71_RS01770 are separated by 32 nucleotides
QEN71_RS01755: QEN71_RS01755 - RNA polymerase factor sigma-54, at 383,285 to 384,802
_RS01755
QEN71_RS01760: QEN71_RS01760 - LPS export ABC transporter ATP-binding protein, at 385,032 to 385,814
_RS01760
QEN71_RS01765: QEN71_RS01765 - lipopolysaccharide transport periplasmic protein LptA, at 385,811 to 386,488
_RS01765
QEN71_RS01770: QEN71_RS01770 - LPS export ABC transporter periplasmic protein LptC, at 386,521 to 387,114
_RS01770
Position (kb) 385
386 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 384.233 kb on + strand, within QEN71_RS01755 at 384.233 kb on + strand, within QEN71_RS01755 at 384.234 kb on - strand, within QEN71_RS01755 at 384.234 kb on - strand, within QEN71_RS01755 at 384.234 kb on - strand, within QEN71_RS01755 at 384.234 kb on - strand, within QEN71_RS01755 at 384.258 kb on + strand, within QEN71_RS01755 at 384.258 kb on + strand, within QEN71_RS01755 at 384.259 kb on - strand, within QEN71_RS01755 at 384.429 kb on + strand, within QEN71_RS01755 at 384.430 kb on - strand, within QEN71_RS01755 at 384.430 kb on - strand, within QEN71_RS01755 at 384.486 kb on + strand, within QEN71_RS01755 at 384.486 kb on + strand, within QEN71_RS01755 at 384.486 kb on + strand, within QEN71_RS01755 at 384.486 kb on + strand, within QEN71_RS01755 at 384.486 kb on + strand, within QEN71_RS01755 at 384.486 kb on + strand, within QEN71_RS01755 at 384.487 kb on - strand, within QEN71_RS01755 at 384.487 kb on - strand, within QEN71_RS01755 at 384.487 kb on - strand, within QEN71_RS01755 at 384.487 kb on - strand, within QEN71_RS01755 at 384.487 kb on - strand, within QEN71_RS01755 at 384.487 kb on - strand, within QEN71_RS01755 at 384.487 kb on - strand, within QEN71_RS01755 at 384.487 kb on - strand, within QEN71_RS01755 at 384.487 kb on - strand, within QEN71_RS01755 at 384.487 kb on - strand, within QEN71_RS01755 at 384.715 kb on + strand at 384.715 kb on + strand at 384.716 kb on - strand at 384.716 kb on - strand at 384.716 kb on - strand at 384.716 kb on - strand at 384.716 kb on - strand at 384.716 kb on - strand at 384.822 kb on + strand at 384.822 kb on + strand at 384.822 kb on + strand at 384.822 kb on + strand at 384.822 kb on + strand at 384.822 kb on + strand at 384.823 kb on - strand at 384.823 kb on - strand at 384.823 kb on - strand at 384.845 kb on + strand at 384.845 kb on + strand at 384.846 kb on - strand at 384.846 kb on - strand at 384.901 kb on - strand at 384.901 kb on - strand at 384.912 kb on - strand at 384.936 kb on + strand at 384.936 kb on + strand at 384.936 kb on + strand at 384.950 kb on + strand at 384.951 kb on - strand at 384.951 kb on - strand at 384.951 kb on - strand at 384.951 kb on - strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.033 kb on + strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 385.034 kb on - strand at 386.511 kb on - strand at 386.511 kb on - strand at 386.511 kb on - strand at 386.523 kb on - strand at 386.523 kb on - strand at 386.523 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 384,233 + QEN71_RS01755 0.62 -1.0 384,233 + QEN71_RS01755 0.62 +1.3 384,234 - QEN71_RS01755 0.63 +2.9 384,234 - QEN71_RS01755 0.63 +1.1 384,234 - QEN71_RS01755 0.63 +0.8 384,234 - QEN71_RS01755 0.63 +2.3 384,258 + QEN71_RS01755 0.64 +1.0 384,258 + QEN71_RS01755 0.64 +0.1 384,259 - QEN71_RS01755 0.64 +1.7 384,429 + QEN71_RS01755 0.75 -0.0 384,430 - QEN71_RS01755 0.75 +1.7 384,430 - QEN71_RS01755 0.75 +2.9 384,486 + QEN71_RS01755 0.79 -0.9 384,486 + QEN71_RS01755 0.79 -0.2 384,486 + QEN71_RS01755 0.79 +2.0 384,486 + QEN71_RS01755 0.79 +1.3 384,486 + QEN71_RS01755 0.79 -1.4 384,486 + QEN71_RS01755 0.79 +2.7 384,487 - QEN71_RS01755 0.79 -1.7 384,487 - QEN71_RS01755 0.79 +4.6 384,487 - QEN71_RS01755 0.79 +0.9 384,487 - QEN71_RS01755 0.79 +0.9 384,487 - QEN71_RS01755 0.79 +4.2 384,487 - QEN71_RS01755 0.79 +0.3 384,487 - QEN71_RS01755 0.79 +0.8 384,487 - QEN71_RS01755 0.79 +0.3 384,487 - QEN71_RS01755 0.79 +2.1 384,487 - QEN71_RS01755 0.79 +1.6 384,715 + +4.8 384,715 + -0.1 384,716 - +0.3 384,716 - -0.6 384,716 - -0.8 384,716 - +0.0 384,716 - -2.2 384,716 - +0.8 384,822 + +1.1 384,822 + -0.3 384,822 + -0.7 384,822 + +0.5 384,822 + -0.5 384,822 + +3.0 384,823 - -1.1 384,823 - -0.3 384,823 - -0.7 384,845 + +1.9 384,845 + +0.2 384,846 - -0.6 384,846 - -1.1 384,901 - +0.2 384,901 - -0.7 384,912 - +0.3 384,936 + +0.3 384,936 + +0.7 384,936 + -0.2 384,950 + +1.8 384,951 - +0.2 384,951 - +0.6 384,951 - +0.8 384,951 - +0.4 385,033 + -1.9 385,033 + +0.0 385,033 + -0.3 385,033 + -1.0 385,033 + +0.5 385,033 + +0.5 385,033 + -0.6 385,033 + -1.6 385,033 + -1.4 385,033 + -0.6 385,033 + +1.3 385,033 + +2.2 385,033 + +1.4 385,033 + -0.1 385,034 - +2.1 385,034 - -0.6 385,034 - +0.3 385,034 - +0.0 385,034 - +2.3 385,034 - +0.7 385,034 - -0.5 385,034 - -1.3 385,034 - -1.3 385,034 - +0.4 385,034 - +0.7 385,034 - -2.5 385,034 - +0.1 385,034 - +1.5 386,511 - -1.1 386,511 - +0.5 386,511 - -0.2 386,523 - +0.8 386,523 - -1.1 386,523 - -0.1
Or see this region's nucleotide sequence