Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS01430 and QEN71_RS01435 are separated by 3 nucleotides QEN71_RS01435 and QEN71_RS01440 are separated by 144 nucleotides
QEN71_RS01430: QEN71_RS01430 - phosphoenolpyruvate--protein phosphotransferase, at 320,790 to 322,532
_RS01430
QEN71_RS01435: QEN71_RS01435 - molybdopterin-synthase adenylyltransferase MoeB, at 322,536 to 323,294
_RS01435
QEN71_RS01440: QEN71_RS01440 - S41 family peptidase, at 323,439 to 325,031
_RS01440
Position (kb) 322
323
324 Strain fitness (log2 ratio) -2
-1
0
1
2 at 321.756 kb on + strand, within QEN71_RS01430 at 321.756 kb on + strand, within QEN71_RS01430 at 321.756 kb on + strand, within QEN71_RS01430 at 321.757 kb on - strand, within QEN71_RS01430 at 321.757 kb on - strand, within QEN71_RS01430 at 321.921 kb on - strand, within QEN71_RS01430 at 321.921 kb on - strand, within QEN71_RS01430 at 321.921 kb on - strand, within QEN71_RS01430 at 321.994 kb on + strand, within QEN71_RS01430 at 321.995 kb on - strand, within QEN71_RS01430 at 322.074 kb on + strand, within QEN71_RS01430 at 322.075 kb on - strand, within QEN71_RS01430 at 322.075 kb on - strand, within QEN71_RS01430 at 322.192 kb on - strand, within QEN71_RS01430 at 322.237 kb on - strand, within QEN71_RS01430 at 322.237 kb on - strand, within QEN71_RS01430 at 322.237 kb on - strand, within QEN71_RS01430 at 322.537 kb on + strand at 322.537 kb on + strand at 322.538 kb on - strand at 323.357 kb on + strand at 323.357 kb on + strand at 323.357 kb on + strand at 323.357 kb on + strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.362 kb on + strand at 323.426 kb on + strand at 323.426 kb on + strand at 323.427 kb on - strand at 323.427 kb on - strand at 323.440 kb on + strand at 323.440 kb on + strand at 323.440 kb on + strand at 323.440 kb on + strand at 323.440 kb on + strand at 323.440 kb on + strand at 323.440 kb on + strand at 323.440 kb on + strand at 323.440 kb on + strand at 323.440 kb on + strand at 323.441 kb on - strand at 323.441 kb on - strand at 323.441 kb on - strand at 323.441 kb on - strand at 323.441 kb on - strand at 323.441 kb on - strand at 323.441 kb on - strand at 323.441 kb on - strand at 323.441 kb on - strand at 323.944 kb on + strand, within QEN71_RS01440 at 323.945 kb on - strand, within QEN71_RS01440 at 323.947 kb on + strand, within QEN71_RS01440 at 324.098 kb on - strand, within QEN71_RS01440 at 324.184 kb on + strand, within QEN71_RS01440 at 324.184 kb on + strand, within QEN71_RS01440 at 324.184 kb on + strand, within QEN71_RS01440 at 324.184 kb on + strand, within QEN71_RS01440 at 324.184 kb on + strand, within QEN71_RS01440 at 324.185 kb on - strand, within QEN71_RS01440 at 324.194 kb on - strand, within QEN71_RS01440
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 321,756 + QEN71_RS01430 0.55 +1.1 321,756 + QEN71_RS01430 0.55 +0.3 321,756 + QEN71_RS01430 0.55 -0.0 321,757 - QEN71_RS01430 0.55 -0.3 321,757 - QEN71_RS01430 0.55 -0.9 321,921 - QEN71_RS01430 0.65 -0.9 321,921 - QEN71_RS01430 0.65 -0.7 321,921 - QEN71_RS01430 0.65 -0.3 321,994 + QEN71_RS01430 0.69 -0.0 321,995 - QEN71_RS01430 0.69 +1.7 322,074 + QEN71_RS01430 0.74 +0.3 322,075 - QEN71_RS01430 0.74 -0.0 322,075 - QEN71_RS01430 0.74 -0.0 322,192 - QEN71_RS01430 0.80 +0.3 322,237 - QEN71_RS01430 0.83 +2.0 322,237 - QEN71_RS01430 0.83 -0.3 322,237 - QEN71_RS01430 0.83 +0.3 322,537 + -1.4 322,537 + +0.8 322,538 - -1.8 323,357 + -0.5 323,357 + +0.1 323,357 + +0.9 323,357 + -0.4 323,358 - +0.6 323,358 - -0.7 323,358 - -1.2 323,358 - -0.7 323,362 + +0.1 323,426 + +0.2 323,426 + -0.5 323,427 - +1.9 323,427 - -0.5 323,440 + +2.3 323,440 + +0.2 323,440 + -0.9 323,440 + -0.9 323,440 + -0.2 323,440 + -1.1 323,440 + +0.0 323,440 + -1.0 323,440 + -0.6 323,440 + -1.0 323,441 - -0.5 323,441 - +1.1 323,441 - -0.8 323,441 - +0.3 323,441 - -1.0 323,441 - -0.1 323,441 - -0.3 323,441 - -1.4 323,441 - -0.2 323,944 + QEN71_RS01440 0.32 +0.3 323,945 - QEN71_RS01440 0.32 -0.3 323,947 + QEN71_RS01440 0.32 -0.9 324,098 - QEN71_RS01440 0.41 -0.9 324,184 + QEN71_RS01440 0.47 -0.7 324,184 + QEN71_RS01440 0.47 -0.3 324,184 + QEN71_RS01440 0.47 -0.7 324,184 + QEN71_RS01440 0.47 -0.5 324,184 + QEN71_RS01440 0.47 -0.5 324,185 - QEN71_RS01440 0.47 +0.3 324,194 - QEN71_RS01440 0.47 -0.7
Or see this region's nucleotide sequence