Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS01110 and QEN71_RS01115 are separated by 18 nucleotides QEN71_RS01115 and QEN71_RS01120 are separated by 49 nucleotides QEN71_RS01120 and QEN71_RS01125 are separated by 64 nucleotides
QEN71_RS01110: QEN71_RS01110 - YchJ family protein, at 253,740 to 254,186
_RS01110
QEN71_RS01115: QEN71_RS01115 - acyl-CoA dehydrogenase family protein, at 254,205 to 255,335
_RS01115
QEN71_RS01120: QEN71_RS01120 - SDR family oxidoreductase, at 255,385 to 256,062
_RS01120
QEN71_RS01125: QEN71_RS01125 - acetyl-CoA C-acetyltransferase, at 256,127 to 257,317
_RS01125
Position (kb) 254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 253.242 kb on + strand at 253.242 kb on + strand at 253.242 kb on + strand at 253.242 kb on + strand at 253.242 kb on + strand at 253.243 kb on - strand at 253.243 kb on - strand at 253.243 kb on - strand at 253.243 kb on - strand at 253.243 kb on - strand at 253.243 kb on - strand at 253.311 kb on + strand at 253.465 kb on + strand at 253.466 kb on - strand at 253.494 kb on + strand at 253.495 kb on - strand at 253.503 kb on + strand at 253.503 kb on + strand at 253.504 kb on - strand at 253.504 kb on - strand at 253.504 kb on - strand at 253.504 kb on - strand at 253.504 kb on - strand at 253.519 kb on + strand at 253.520 kb on - strand at 253.537 kb on + strand at 253.537 kb on + strand at 253.537 kb on + strand at 253.537 kb on + strand at 253.537 kb on + strand at 253.538 kb on - strand at 253.538 kb on - strand at 253.538 kb on - strand at 253.557 kb on - strand at 253.682 kb on - strand at 253.682 kb on - strand at 253.705 kb on + strand at 253.705 kb on + strand at 253.705 kb on + strand at 253.706 kb on - strand at 253.706 kb on - strand at 253.706 kb on - strand at 253.736 kb on - strand at 253.768 kb on + strand at 253.768 kb on + strand at 253.768 kb on + strand at 253.769 kb on - strand at 253.843 kb on + strand, within QEN71_RS01110 at 253.843 kb on + strand, within QEN71_RS01110 at 253.874 kb on + strand, within QEN71_RS01110 at 253.875 kb on - strand, within QEN71_RS01110 at 253.911 kb on + strand, within QEN71_RS01110 at 253.912 kb on - strand, within QEN71_RS01110 at 253.912 kb on - strand, within QEN71_RS01110 at 253.912 kb on - strand, within QEN71_RS01110 at 253.912 kb on - strand, within QEN71_RS01110 at 253.912 kb on - strand, within QEN71_RS01110 at 253.912 kb on - strand, within QEN71_RS01110 at 253.993 kb on + strand, within QEN71_RS01110 at 253.993 kb on + strand, within QEN71_RS01110 at 253.994 kb on - strand, within QEN71_RS01110 at 253.994 kb on - strand, within QEN71_RS01110 at 253.994 kb on - strand, within QEN71_RS01110 at 254.014 kb on + strand, within QEN71_RS01110 at 254.014 kb on + strand, within QEN71_RS01110 at 254.014 kb on + strand, within QEN71_RS01110 at 254.014 kb on + strand, within QEN71_RS01110 at 254.015 kb on - strand, within QEN71_RS01110 at 254.015 kb on - strand, within QEN71_RS01110 at 254.021 kb on + strand, within QEN71_RS01110 at 254.024 kb on - strand, within QEN71_RS01110 at 254.024 kb on - strand, within QEN71_RS01110 at 254.075 kb on + strand, within QEN71_RS01110 at 254.075 kb on + strand, within QEN71_RS01110 at 254.075 kb on + strand, within QEN71_RS01110 at 254.075 kb on + strand, within QEN71_RS01110 at 254.076 kb on - strand, within QEN71_RS01110 at 254.076 kb on - strand, within QEN71_RS01110 at 254.076 kb on - strand, within QEN71_RS01110 at 254.077 kb on + strand, within QEN71_RS01110 at 254.077 kb on + strand, within QEN71_RS01110 at 254.077 kb on + strand, within QEN71_RS01110 at 254.077 kb on + strand, within QEN71_RS01110 at 254.077 kb on + strand, within QEN71_RS01110 at 254.077 kb on + strand, within QEN71_RS01110 at 254.077 kb on + strand, within QEN71_RS01110 at 254.078 kb on - strand, within QEN71_RS01110 at 254.078 kb on - strand, within QEN71_RS01110 at 254.078 kb on - strand, within QEN71_RS01110 at 254.078 kb on - strand, within QEN71_RS01110 at 254.078 kb on - strand, within QEN71_RS01110 at 254.078 kb on - strand, within QEN71_RS01110 at 254.078 kb on - strand, within QEN71_RS01110 at 254.078 kb on - strand, within QEN71_RS01110 at 254.206 kb on + strand at 254.206 kb on + strand at 254.257 kb on + strand at 254.257 kb on + strand at 254.257 kb on + strand at 254.257 kb on + strand at 254.257 kb on + strand at 254.257 kb on + strand at 254.258 kb on - strand at 254.258 kb on - strand at 254.258 kb on - strand at 254.258 kb on - strand at 254.284 kb on + strand at 254.284 kb on + strand at 254.284 kb on + strand at 254.285 kb on - strand at 254.288 kb on + strand at 254.288 kb on + strand at 254.288 kb on + strand at 254.288 kb on + strand at 254.288 kb on + strand at 254.288 kb on + strand at 254.288 kb on + strand at 254.289 kb on - strand at 254.289 kb on - strand at 254.289 kb on - strand at 254.289 kb on - strand at 254.289 kb on - strand at 254.289 kb on - strand at 254.289 kb on - strand at 254.314 kb on + strand at 254.764 kb on + strand, within QEN71_RS01115 at 254.764 kb on + strand, within QEN71_RS01115 at 254.764 kb on + strand, within QEN71_RS01115 at 254.764 kb on + strand, within QEN71_RS01115 at 254.765 kb on - strand, within QEN71_RS01115 at 254.765 kb on - strand, within QEN71_RS01115 at 254.822 kb on + strand, within QEN71_RS01115 at 254.822 kb on + strand, within QEN71_RS01115 at 254.899 kb on + strand, within QEN71_RS01115 at 254.899 kb on + strand, within QEN71_RS01115 at 254.900 kb on - strand, within QEN71_RS01115 at 254.900 kb on - strand, within QEN71_RS01115 at 254.900 kb on - strand, within QEN71_RS01115 at 254.900 kb on - strand, within QEN71_RS01115 at 254.900 kb on - strand, within QEN71_RS01115 at 255.071 kb on + strand, within QEN71_RS01115 at 255.071 kb on + strand, within QEN71_RS01115 at 255.071 kb on + strand, within QEN71_RS01115 at 255.071 kb on + strand, within QEN71_RS01115 at 255.071 kb on + strand, within QEN71_RS01115 at 255.071 kb on + strand, within QEN71_RS01115 at 255.072 kb on - strand, within QEN71_RS01115 at 255.072 kb on - strand, within QEN71_RS01115 at 255.072 kb on - strand, within QEN71_RS01115 at 255.072 kb on - strand, within QEN71_RS01115 at 255.072 kb on - strand, within QEN71_RS01115 at 255.072 kb on - strand, within QEN71_RS01115 at 255.095 kb on + strand, within QEN71_RS01115 at 255.096 kb on - strand, within QEN71_RS01115 at 255.096 kb on - strand, within QEN71_RS01115 at 255.096 kb on - strand, within QEN71_RS01115 at 255.127 kb on - strand, within QEN71_RS01115 at 255.166 kb on + strand, within QEN71_RS01115 at 255.358 kb on + strand at 255.358 kb on + strand at 255.358 kb on + strand at 255.377 kb on + strand at 255.386 kb on + strand at 255.387 kb on - strand at 255.387 kb on - strand at 255.410 kb on + strand at 255.410 kb on + strand at 255.411 kb on - strand at 255.627 kb on - strand, within QEN71_RS01120 at 255.660 kb on + strand, within QEN71_RS01120 at 255.661 kb on - strand, within QEN71_RS01120 at 255.661 kb on - strand, within QEN71_RS01120 at 255.751 kb on + strand, within QEN71_RS01120 at 255.752 kb on - strand, within QEN71_RS01120 at 255.752 kb on - strand, within QEN71_RS01120 at 255.752 kb on - strand, within QEN71_RS01120 at 255.752 kb on - strand, within QEN71_RS01120 at 255.752 kb on - strand, within QEN71_RS01120 at 255.821 kb on + strand, within QEN71_RS01120 at 255.821 kb on + strand, within QEN71_RS01120 at 255.822 kb on - strand, within QEN71_RS01120 at 255.822 kb on - strand, within QEN71_RS01120 at 255.822 kb on - strand, within QEN71_RS01120 at 255.906 kb on + strand, within QEN71_RS01120 at 256.066 kb on + strand at 256.066 kb on + strand at 256.066 kb on + strand at 256.067 kb on - strand at 256.067 kb on - strand at 256.128 kb on + strand at 256.129 kb on - strand at 256.129 kb on - strand at 256.129 kb on - strand at 256.129 kb on - strand at 256.129 kb on - strand at 256.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 253,242 + -0.3 253,242 + +0.3 253,242 + -1.4 253,242 + -1.2 253,242 + -1.3 253,243 - -1.5 253,243 - -0.2 253,243 - -1.3 253,243 - -1.3 253,243 - -0.3 253,243 - +0.1 253,311 + -1.9 253,465 + -0.7 253,466 - +0.7 253,494 + -1.5 253,495 - +0.2 253,503 + +0.2 253,503 + -0.0 253,504 - -2.2 253,504 - +2.3 253,504 - -0.5 253,504 - -0.5 253,504 - +0.0 253,519 + +1.2 253,520 - +0.1 253,537 + +1.0 253,537 + -0.3 253,537 + -0.0 253,537 + +0.6 253,537 + -2.0 253,538 - -0.5 253,538 - +1.7 253,538 - -0.6 253,557 - -0.7 253,682 - +0.5 253,682 - +0.1 253,705 + -0.3 253,705 + -0.5 253,705 + +1.3 253,706 - -0.3 253,706 - -0.5 253,706 - +0.3 253,736 - +0.1 253,768 + +0.4 253,768 + -0.2 253,768 + +0.3 253,769 - -0.6 253,843 + QEN71_RS01110 0.23 -0.3 253,843 + QEN71_RS01110 0.23 -0.4 253,874 + QEN71_RS01110 0.30 -2.7 253,875 - QEN71_RS01110 0.30 +0.4 253,911 + QEN71_RS01110 0.38 -0.4 253,912 - QEN71_RS01110 0.38 +1.0 253,912 - QEN71_RS01110 0.38 -0.0 253,912 - QEN71_RS01110 0.38 -0.3 253,912 - QEN71_RS01110 0.38 +1.4 253,912 - QEN71_RS01110 0.38 +0.5 253,912 - QEN71_RS01110 0.38 -0.0 253,993 + QEN71_RS01110 0.57 +1.5 253,993 + QEN71_RS01110 0.57 +0.0 253,994 - QEN71_RS01110 0.57 -0.0 253,994 - QEN71_RS01110 0.57 -0.5 253,994 - QEN71_RS01110 0.57 -0.8 254,014 + QEN71_RS01110 0.61 -2.7 254,014 + QEN71_RS01110 0.61 -1.6 254,014 + QEN71_RS01110 0.61 +0.6 254,014 + QEN71_RS01110 0.61 -0.5 254,015 - QEN71_RS01110 0.62 -0.8 254,015 - QEN71_RS01110 0.62 +0.1 254,021 + QEN71_RS01110 0.63 -0.7 254,024 - QEN71_RS01110 0.64 -0.4 254,024 - QEN71_RS01110 0.64 +2.0 254,075 + QEN71_RS01110 0.75 +0.6 254,075 + QEN71_RS01110 0.75 +0.3 254,075 + QEN71_RS01110 0.75 -0.9 254,075 + QEN71_RS01110 0.75 +0.5 254,076 - QEN71_RS01110 0.75 +0.8 254,076 - QEN71_RS01110 0.75 +1.2 254,076 - QEN71_RS01110 0.75 -0.5 254,077 + QEN71_RS01110 0.75 +0.4 254,077 + QEN71_RS01110 0.75 -0.7 254,077 + QEN71_RS01110 0.75 +0.5 254,077 + QEN71_RS01110 0.75 -3.3 254,077 + QEN71_RS01110 0.75 -0.5 254,077 + QEN71_RS01110 0.75 +0.3 254,077 + QEN71_RS01110 0.75 +0.9 254,078 - QEN71_RS01110 0.76 +0.3 254,078 - QEN71_RS01110 0.76 -1.1 254,078 - QEN71_RS01110 0.76 -0.3 254,078 - QEN71_RS01110 0.76 -0.5 254,078 - QEN71_RS01110 0.76 +0.7 254,078 - QEN71_RS01110 0.76 +1.0 254,078 - QEN71_RS01110 0.76 -0.3 254,078 - QEN71_RS01110 0.76 -0.0 254,206 + +1.9 254,206 + -0.4 254,257 + -2.1 254,257 + +1.7 254,257 + +1.1 254,257 + +2.6 254,257 + +2.0 254,257 + -1.0 254,258 - -0.6 254,258 - -1.8 254,258 - +1.8 254,258 - -0.6 254,284 + +0.3 254,284 + +1.2 254,284 + +0.3 254,285 - +0.3 254,288 + -0.6 254,288 + +0.4 254,288 + -0.4 254,288 + -0.3 254,288 + +2.2 254,288 + -0.1 254,288 + -0.9 254,289 - -0.9 254,289 - +0.0 254,289 - -0.3 254,289 - +0.0 254,289 - +2.0 254,289 - +2.7 254,289 - -0.0 254,314 + +1.5 254,764 + QEN71_RS01115 0.49 +1.1 254,764 + QEN71_RS01115 0.49 -0.5 254,764 + QEN71_RS01115 0.49 +0.5 254,764 + QEN71_RS01115 0.49 -0.3 254,765 - QEN71_RS01115 0.50 -0.9 254,765 - QEN71_RS01115 0.50 -0.3 254,822 + QEN71_RS01115 0.55 +0.9 254,822 + QEN71_RS01115 0.55 -2.7 254,899 + QEN71_RS01115 0.61 +2.3 254,899 + QEN71_RS01115 0.61 +0.9 254,900 - QEN71_RS01115 0.61 -0.5 254,900 - QEN71_RS01115 0.61 +0.1 254,900 - QEN71_RS01115 0.61 +0.3 254,900 - QEN71_RS01115 0.61 -0.6 254,900 - QEN71_RS01115 0.61 +0.8 255,071 + QEN71_RS01115 0.77 -0.5 255,071 + QEN71_RS01115 0.77 -0.3 255,071 + QEN71_RS01115 0.77 -1.3 255,071 + QEN71_RS01115 0.77 +1.1 255,071 + QEN71_RS01115 0.77 -0.6 255,071 + QEN71_RS01115 0.77 +0.6 255,072 - QEN71_RS01115 0.77 +0.6 255,072 - QEN71_RS01115 0.77 -0.2 255,072 - QEN71_RS01115 0.77 +0.9 255,072 - QEN71_RS01115 0.77 +0.2 255,072 - QEN71_RS01115 0.77 -0.3 255,072 - QEN71_RS01115 0.77 +0.6 255,095 + QEN71_RS01115 0.79 +2.3 255,096 - QEN71_RS01115 0.79 +1.0 255,096 - QEN71_RS01115 0.79 +0.4 255,096 - QEN71_RS01115 0.79 -0.0 255,127 - QEN71_RS01115 0.82 +1.0 255,166 + QEN71_RS01115 0.85 +0.3 255,358 + -0.8 255,358 + +1.1 255,358 + -0.5 255,377 + +1.7 255,386 + -0.7 255,387 - +0.3 255,387 - +0.4 255,410 + +0.3 255,410 + -0.4 255,411 - +0.1 255,627 - QEN71_RS01120 0.36 -0.7 255,660 + QEN71_RS01120 0.41 +0.3 255,661 - QEN71_RS01120 0.41 -1.1 255,661 - QEN71_RS01120 0.41 -0.1 255,751 + QEN71_RS01120 0.54 -1.3 255,752 - QEN71_RS01120 0.54 -1.4 255,752 - QEN71_RS01120 0.54 -0.7 255,752 - QEN71_RS01120 0.54 +0.3 255,752 - QEN71_RS01120 0.54 +0.3 255,752 - QEN71_RS01120 0.54 +0.3 255,821 + QEN71_RS01120 0.64 -0.4 255,821 + QEN71_RS01120 0.64 -2.1 255,822 - QEN71_RS01120 0.64 -1.2 255,822 - QEN71_RS01120 0.64 +0.1 255,822 - QEN71_RS01120 0.64 +1.2 255,906 + QEN71_RS01120 0.77 -0.3 256,066 + -0.1 256,066 + +0.3 256,066 + +0.4 256,067 - +0.6 256,067 - -0.2 256,128 + -1.0 256,129 - +1.3 256,129 - +0.5 256,129 - +0.5 256,129 - +0.3 256,129 - -1.0 256,129 - -0.0
Or see this region's nucleotide sequence