Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS00725 and QEN71_RS00730 are separated by 486 nucleotides
QEN71_RS00725: QEN71_RS00725 - hypothetical protein, at 163,150 to 164,439
_RS00725
QEN71_RS00730: QEN71_RS00730 - hypothetical protein, at 164,926 to 165,165
_RS00730
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 163.941 kb on + strand, within QEN71_RS00725 at 163.941 kb on + strand, within QEN71_RS00725 at 164.003 kb on + strand, within QEN71_RS00725 at 164.003 kb on + strand, within QEN71_RS00725 at 164.003 kb on + strand, within QEN71_RS00725 at 164.003 kb on + strand, within QEN71_RS00725 at 164.003 kb on + strand, within QEN71_RS00725 at 164.004 kb on - strand, within QEN71_RS00725 at 164.004 kb on - strand, within QEN71_RS00725 at 164.004 kb on - strand, within QEN71_RS00725 at 164.148 kb on + strand, within QEN71_RS00725 at 164.225 kb on + strand, within QEN71_RS00725 at 164.226 kb on - strand, within QEN71_RS00725 at 164.226 kb on - strand, within QEN71_RS00725 at 164.269 kb on + strand, within QEN71_RS00725 at 164.269 kb on + strand, within QEN71_RS00725 at 164.270 kb on - strand, within QEN71_RS00725 at 164.270 kb on - strand, within QEN71_RS00725 at 164.284 kb on + strand, within QEN71_RS00725 at 164.284 kb on + strand, within QEN71_RS00725 at 164.284 kb on + strand, within QEN71_RS00725 at 164.285 kb on - strand, within QEN71_RS00725 at 164.285 kb on - strand, within QEN71_RS00725 at 164.285 kb on - strand, within QEN71_RS00725 at 164.296 kb on + strand, within QEN71_RS00725 at 164.296 kb on + strand, within QEN71_RS00725 at 164.296 kb on + strand, within QEN71_RS00725 at 164.298 kb on + strand, within QEN71_RS00725 at 164.298 kb on + strand, within QEN71_RS00725 at 164.298 kb on + strand, within QEN71_RS00725 at 164.298 kb on + strand, within QEN71_RS00725 at 164.298 kb on + strand, within QEN71_RS00725 at 164.298 kb on + strand, within QEN71_RS00725 at 164.298 kb on + strand, within QEN71_RS00725 at 164.298 kb on + strand, within QEN71_RS00725 at 164.299 kb on - strand, within QEN71_RS00725 at 164.334 kb on - strand at 164.399 kb on + strand at 164.399 kb on + strand at 164.399 kb on + strand at 164.400 kb on - strand at 164.400 kb on - strand at 164.403 kb on + strand at 164.403 kb on + strand at 164.404 kb on - strand at 164.404 kb on - strand at 164.404 kb on - strand at 164.404 kb on - strand at 164.404 kb on - strand at 164.488 kb on - strand at 164.488 kb on - strand at 164.488 kb on - strand at 164.521 kb on + strand at 164.522 kb on - strand at 164.522 kb on - strand at 164.527 kb on + strand at 164.527 kb on + strand at 164.527 kb on + strand at 164.553 kb on + strand at 164.553 kb on + strand at 164.553 kb on + strand at 164.553 kb on + strand at 164.553 kb on + strand at 164.553 kb on + strand at 164.554 kb on - strand at 164.554 kb on - strand at 164.554 kb on - strand at 164.554 kb on - strand at 164.554 kb on - strand at 164.554 kb on - strand at 164.554 kb on - strand at 164.674 kb on - strand at 164.674 kb on - strand at 164.732 kb on + strand at 164.732 kb on + strand at 164.732 kb on + strand at 164.733 kb on - strand at 164.733 kb on - strand at 164.733 kb on - strand at 164.733 kb on - strand at 164.753 kb on + strand at 164.753 kb on + strand at 164.754 kb on - strand at 164.754 kb on - strand at 164.754 kb on - strand at 164.770 kb on + strand at 164.880 kb on + strand at 164.880 kb on + strand at 164.880 kb on + strand at 164.880 kb on + strand at 164.880 kb on + strand at 164.880 kb on + strand at 164.881 kb on - strand at 164.881 kb on - strand at 164.881 kb on - strand at 164.897 kb on + strand at 164.897 kb on + strand at 164.924 kb on + strand at 164.924 kb on + strand at 164.924 kb on + strand at 164.925 kb on - strand at 164.925 kb on - strand at 164.927 kb on + strand at 165.002 kb on + strand, within QEN71_RS00730 at 165.002 kb on + strand, within QEN71_RS00730 at 165.060 kb on + strand, within QEN71_RS00730 at 165.061 kb on - strand, within QEN71_RS00730 at 165.061 kb on - strand, within QEN71_RS00730 at 165.105 kb on + strand, within QEN71_RS00730 at 165.105 kb on + strand, within QEN71_RS00730 at 165.105 kb on + strand, within QEN71_RS00730 at 165.106 kb on - strand, within QEN71_RS00730 at 165.106 kb on - strand, within QEN71_RS00730 at 165.150 kb on + strand at 165.150 kb on + strand at 165.150 kb on + strand at 165.150 kb on + strand at 165.151 kb on - strand at 165.151 kb on - strand at 165.151 kb on - strand at 165.151 kb on - strand at 165.151 kb on - strand at 165.151 kb on - strand at 165.151 kb on - strand at 165.151 kb on - strand at 165.152 kb on + strand at 165.152 kb on + strand at 165.152 kb on + strand at 165.152 kb on + strand at 165.152 kb on + strand at 165.153 kb on - strand at 165.153 kb on - strand at 165.153 kb on - strand at 165.153 kb on - strand at 165.177 kb on + strand at 165.177 kb on + strand at 165.177 kb on + strand at 165.177 kb on + strand at 165.178 kb on - strand at 165.178 kb on - strand at 165.179 kb on + strand at 165.180 kb on - strand at 165.180 kb on - strand at 165.197 kb on + strand at 165.197 kb on + strand at 165.197 kb on + strand at 165.198 kb on - strand at 165.198 kb on - strand at 165.198 kb on - strand at 165.198 kb on - strand at 165.199 kb on + strand at 165.200 kb on - strand at 165.200 kb on - strand at 165.245 kb on - strand at 165.245 kb on - strand at 165.245 kb on - strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.263 kb on + strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.264 kb on - strand at 165.266 kb on - strand at 165.266 kb on - strand at 165.374 kb on + strand at 165.389 kb on + strand at 165.390 kb on - strand at 165.411 kb on - strand at 165.466 kb on - strand at 165.489 kb on + strand at 165.489 kb on + strand at 165.490 kb on - strand at 165.490 kb on - strand at 165.490 kb on - strand at 165.574 kb on - strand at 165.631 kb on - strand at 165.631 kb on - strand at 165.743 kb on + strand at 165.789 kb on - strand at 165.852 kb on + strand at 165.852 kb on + strand at 165.852 kb on + strand at 165.852 kb on + strand at 165.852 kb on + strand at 165.852 kb on + strand at 165.852 kb on + strand at 165.853 kb on - strand at 165.853 kb on - strand at 165.853 kb on - strand at 165.853 kb on - strand at 165.853 kb on - strand at 165.853 kb on - strand at 165.853 kb on - strand at 165.862 kb on + strand at 165.862 kb on + strand at 165.863 kb on - strand at 165.863 kb on - strand at 165.863 kb on - strand at 165.863 kb on - strand at 165.863 kb on - strand at 165.916 kb on + strand at 165.921 kb on + strand at 165.921 kb on + strand at 165.921 kb on + strand at 165.921 kb on + strand at 165.921 kb on + strand at 165.921 kb on + strand at 165.921 kb on + strand at 165.922 kb on - strand at 165.922 kb on - strand at 165.922 kb on - strand at 165.922 kb on - strand at 165.952 kb on + strand at 165.953 kb on - strand at 165.953 kb on - strand at 165.953 kb on - strand at 165.988 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 163,941 + QEN71_RS00725 0.61 -0.1 163,941 + QEN71_RS00725 0.61 +1.1 164,003 + QEN71_RS00725 0.66 -0.1 164,003 + QEN71_RS00725 0.66 -0.5 164,003 + QEN71_RS00725 0.66 +0.3 164,003 + QEN71_RS00725 0.66 -1.0 164,003 + QEN71_RS00725 0.66 -1.4 164,004 - QEN71_RS00725 0.66 +1.1 164,004 - QEN71_RS00725 0.66 -0.5 164,004 - QEN71_RS00725 0.66 -0.4 164,148 + QEN71_RS00725 0.77 -0.9 164,225 + QEN71_RS00725 0.83 +0.1 164,226 - QEN71_RS00725 0.83 -0.3 164,226 - QEN71_RS00725 0.83 +1.1 164,269 + QEN71_RS00725 0.87 -0.5 164,269 + QEN71_RS00725 0.87 +0.7 164,270 - QEN71_RS00725 0.87 -0.7 164,270 - QEN71_RS00725 0.87 +0.0 164,284 + QEN71_RS00725 0.88 +0.7 164,284 + QEN71_RS00725 0.88 +1.3 164,284 + QEN71_RS00725 0.88 +0.5 164,285 - QEN71_RS00725 0.88 +1.4 164,285 - QEN71_RS00725 0.88 -0.4 164,285 - QEN71_RS00725 0.88 -0.7 164,296 + QEN71_RS00725 0.89 -0.3 164,296 + QEN71_RS00725 0.89 +0.2 164,296 + QEN71_RS00725 0.89 -0.8 164,298 + QEN71_RS00725 0.89 -2.5 164,298 + QEN71_RS00725 0.89 -0.1 164,298 + QEN71_RS00725 0.89 +0.0 164,298 + QEN71_RS00725 0.89 -0.6 164,298 + QEN71_RS00725 0.89 +0.2 164,298 + QEN71_RS00725 0.89 -0.1 164,298 + QEN71_RS00725 0.89 -0.9 164,298 + QEN71_RS00725 0.89 -0.2 164,299 - QEN71_RS00725 0.89 -1.7 164,334 - -0.3 164,399 + +0.4 164,399 + -1.4 164,399 + +1.1 164,400 - +1.6 164,400 - -2.0 164,403 + -1.1 164,403 + -0.4 164,404 - -0.5 164,404 - -0.3 164,404 - -2.3 164,404 - +0.3 164,404 - -0.4 164,488 - -2.0 164,488 - +0.6 164,488 - +0.0 164,521 + +0.0 164,522 - +0.3 164,522 - -0.1 164,527 + +0.3 164,527 + -0.2 164,527 + -0.9 164,553 + -0.7 164,553 + +0.3 164,553 + -0.3 164,553 + -0.0 164,553 + -1.8 164,553 + +1.9 164,554 - +2.8 164,554 - -0.3 164,554 - -0.0 164,554 - -1.0 164,554 - +2.1 164,554 - -0.7 164,554 - +1.0 164,674 - +0.5 164,674 - +0.3 164,732 + -1.2 164,732 + +0.3 164,732 + -1.8 164,733 - -0.7 164,733 - -2.0 164,733 - +1.8 164,733 - -0.2 164,753 + -1.2 164,753 + +0.2 164,754 - +3.1 164,754 - +0.4 164,754 - -0.3 164,770 + -0.8 164,880 + +2.1 164,880 + +0.1 164,880 + -0.7 164,880 + +0.3 164,880 + -1.8 164,880 + +0.6 164,881 - +0.3 164,881 - -0.1 164,881 - +0.3 164,897 + +0.1 164,897 + -1.5 164,924 + +0.4 164,924 + -0.5 164,924 + +1.6 164,925 - +3.0 164,925 - -1.0 164,927 + +0.4 165,002 + QEN71_RS00730 0.32 -1.5 165,002 + QEN71_RS00730 0.32 -0.4 165,060 + QEN71_RS00730 0.56 +1.1 165,061 - QEN71_RS00730 0.56 -1.8 165,061 - QEN71_RS00730 0.56 -0.5 165,105 + QEN71_RS00730 0.75 +2.9 165,105 + QEN71_RS00730 0.75 +1.1 165,105 + QEN71_RS00730 0.75 +0.9 165,106 - QEN71_RS00730 0.75 -0.5 165,106 - QEN71_RS00730 0.75 -1.0 165,150 + -0.7 165,150 + +0.7 165,150 + +0.0 165,150 + -2.0 165,151 - +0.4 165,151 - -1.2 165,151 - +2.0 165,151 - +0.5 165,151 - -0.9 165,151 - +1.3 165,151 - -0.3 165,151 - +1.0 165,152 + +0.3 165,152 + +0.3 165,152 + -0.3 165,152 + -0.2 165,152 + -0.2 165,153 - -0.1 165,153 - -1.9 165,153 - -1.2 165,153 - +0.4 165,177 + -0.3 165,177 + +0.1 165,177 + +2.3 165,177 + +1.3 165,178 - -1.0 165,178 - +0.3 165,179 + +0.5 165,180 - +0.3 165,180 - -0.1 165,197 + -1.0 165,197 + -0.5 165,197 + +1.2 165,198 - +0.6 165,198 - +0.3 165,198 - -0.4 165,198 - +1.3 165,199 + -2.6 165,200 - +0.3 165,200 - -0.7 165,245 - +0.9 165,245 - -1.5 165,245 - -1.0 165,263 + -0.7 165,263 + +1.6 165,263 + -0.9 165,263 + +0.2 165,263 + -0.8 165,263 + +2.0 165,263 + +0.1 165,263 + +0.7 165,263 + +0.8 165,263 + +0.3 165,263 + -0.3 165,263 + +0.5 165,263 + -2.5 165,263 + +0.2 165,264 - -1.4 165,264 - -0.3 165,264 - -1.1 165,264 - +0.9 165,264 - -1.3 165,264 - +0.0 165,264 - -0.7 165,264 - -0.3 165,264 - -0.2 165,264 - -0.3 165,264 - -0.8 165,264 - -0.2 165,266 - -0.5 165,266 - +0.3 165,374 + +2.3 165,389 + +0.3 165,390 - -0.9 165,411 - +2.0 165,466 - -0.2 165,489 + +0.1 165,489 + +0.1 165,490 - +0.5 165,490 - -1.1 165,490 - +0.1 165,574 - +1.4 165,631 - -0.6 165,631 - -0.9 165,743 + -0.3 165,789 - -0.5 165,852 + +0.3 165,852 + -2.3 165,852 + -2.9 165,852 + +1.4 165,852 + +1.0 165,852 + +0.5 165,852 + -0.7 165,853 - -0.8 165,853 - +1.0 165,853 - -1.5 165,853 - +1.5 165,853 - -2.0 165,853 - +2.5 165,853 - +0.1 165,862 + +2.2 165,862 + +0.3 165,863 - +0.1 165,863 - +0.0 165,863 - -0.2 165,863 - -0.7 165,863 - -1.0 165,916 + -0.6 165,921 + +1.2 165,921 + +0.4 165,921 + -0.8 165,921 + +0.7 165,921 + -0.5 165,921 + +0.8 165,921 + -0.7 165,922 - +1.4 165,922 - +0.3 165,922 - -0.1 165,922 - +0.6 165,952 + -0.7 165,953 - -0.1 165,953 - +0.0 165,953 - -0.5 165,988 + +0.7
Or see this region's nucleotide sequence