Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04097

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
4,593,536	-				-1.7
4,593,537	-				-0.1
4,593,612	-				+0.0
4,593,630	+				-0.1
4,593,796	-		MIT1002_04095	0.29	-1.3
4,593,814	+		MIT1002_04095	0.37	+0.2
4,593,835	+		MIT1002_04095	0.46	+1.0
4,593,835	+		MIT1002_04095	0.46	+2.1
4,593,849	+		MIT1002_04095	0.52	-0.7
4,593,849	+		MIT1002_04095	0.52	+0.3
4,594,044	+				+0.1
4,594,049	+				-1.1
4,594,049	+				+1.8
4,594,059	+				+0.3
4,594,112	-				+0.2
4,594,171	+				-1.1
4,594,179	-				-0.2
4,594,299	-		MIT1002_04096	0.15	-2.2
4,594,318	+		MIT1002_04096	0.22	+0.3
4,594,346	-		MIT1002_04096	0.32	+0.1
4,594,349	-		MIT1002_04096	0.33	+0.1
4,594,404	+		MIT1002_04096	0.52	-1.2
4,594,406	+		MIT1002_04096	0.53	+0.5
4,594,412	-		MIT1002_04096	0.55	+0.7
4,594,414	-		MIT1002_04096	0.56	-0.0
4,594,520	+				-1.4
4,594,563	+				-0.2
4,594,631	-				-2.2
4,594,632	+				-0.2
4,594,714	+		MIT1002_04097	0.14	-0.7
4,594,714	+		MIT1002_04097	0.14	-1.0
4,594,750	-		MIT1002_04097	0.17	-1.8
4,594,781	+		MIT1002_04097	0.19	+0.6
4,594,789	-		MIT1002_04097	0.19	-2.9
4,594,860	+		MIT1002_04097	0.25	-0.3
4,594,923	+		MIT1002_04097	0.29	-2.1
4,594,959	+		MIT1002_04097	0.32	-1.7
4,594,974	-		MIT1002_04097	0.33	+0.0
4,594,986	+		MIT1002_04097	0.34	+2.4
4,595,004	-		MIT1002_04097	0.36	-0.2
4,595,036	-		MIT1002_04097	0.38	+1.3
4,595,036	-		MIT1002_04097	0.38	-0.0
4,595,084	-		MIT1002_04097	0.41	-0.1
4,595,100	-		MIT1002_04097	0.43	-0.1
4,595,100	-		MIT1002_04097	0.43	-1.7
4,595,107	+		MIT1002_04097	0.43	+0.6
4,595,116	-		MIT1002_04097	0.44	-2.9
4,595,116	-		MIT1002_04097	0.44	+0.4
4,595,145	-		MIT1002_04097	0.46	+2.1
4,595,184	-		MIT1002_04097	0.49	-2.2
4,595,184	-		MIT1002_04097	0.49	+0.5
4,595,382	+		MIT1002_04097	0.64	+0.1
4,595,390	-		MIT1002_04097	0.64	-0.4
4,595,544	+		MIT1002_04097	0.76	-0.7
4,595,546	+		MIT1002_04097	0.76	+1.1
4,595,566	+		MIT1002_04097	0.78	-1.7
4,595,619	+		MIT1002_04097	0.81	+0.5
4,595,645	+		MIT1002_04097	0.83	+0.2
4,595,692	-		MIT1002_04097	0.87	-1.9
4,595,712	-		MIT1002_04097	0.88	-0.8
4,595,726	-		MIT1002_04097	0.89	+0.0
4,595,733	-				+0.3
4,595,768	-				-0.1
4,595,794	-				+1.1
4,595,818	+				-0.2
4,596,060	+				+0.4
4,596,083	+				-0.4
4,596,122	+				+0.3
4,596,129	+				+0.4
4,596,149	-				+1.2
4,596,183	-				-1.9
4,596,183	-				+2.0
4,596,185	+				+0.1
4,596,185	-				-1.1
4,596,229	+				-0.2
4,596,229	+				+0.9
4,596,240	+				+0.1
4,596,240	+				+1.3
4,596,248	-				+0.7
4,596,291	-				+2.6
4,596,295	+				+0.7
4,596,295	+				-0.4
4,596,308	+				-0.1
4,596,309	-				-0.6
4,596,316	-		MIT1002_04098	0.10	-0.9
4,596,330	+		MIT1002_04098	0.11	-1.4
4,596,453	+		MIT1002_04098	0.19	+1.1
4,596,458	+		MIT1002_04098	0.20	+1.1
4,596,469	+		MIT1002_04098	0.20	+0.1
4,596,477	-		MIT1002_04098	0.21	+0.5
4,596,487	-		MIT1002_04098	0.22	+0.1
4,596,490	-		MIT1002_04098	0.22	-0.0
4,596,574	+		MIT1002_04098	0.27	+1.0
4,596,582	-		MIT1002_04098	0.28	+0.7
4,596,598	+		MIT1002_04098	0.29	-1.0
4,596,603	+		MIT1002_04098	0.29	-0.2
4,596,611	-		MIT1002_04098	0.30	-2.1
4,596,648	+		MIT1002_04098	0.32	-1.4
4,596,659	+		MIT1002_04098	0.33	+1.1
4,596,667	-		MIT1002_04098	0.34	-0.6
4,596,685	+		MIT1002_04098	0.35	+0.7
4,596,728	-		MIT1002_04098	0.38	-1.4
4,596,744	+		MIT1002_04098	0.39	+1.4
4,596,846	-		MIT1002_04098	0.45	-0.3
4,596,846	-		MIT1002_04098	0.45	+1.9