Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04022

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
4,509,192	+		MIT1002_04020	0.68	+0.3
4,509,291	+		MIT1002_04020	0.82	+0.3
4,509,291	+		MIT1002_04020	0.82	+0.3
4,509,303	+		MIT1002_04020	0.83	-1.7
4,509,303	+		MIT1002_04020	0.83	-1.0
4,509,311	-		MIT1002_04020	0.85	-1.3
4,509,321	-		MIT1002_04020	0.86	-1.4
4,509,370	+				-0.3
4,509,393	-				-0.6
4,509,539	+				+2.4
4,509,546	-		MIT1002_04021	0.10	-0.3
4,509,546	-		MIT1002_04021	0.10	-2.1
4,509,677	+		MIT1002_04021	0.44	+0.1
4,509,689	+		MIT1002_04021	0.47	+0.1
4,509,693	+		MIT1002_04021	0.48	+0.5
4,509,734	-		MIT1002_04021	0.59	+0.3
4,509,860	+				+0.1
4,509,865	+				-0.2
4,509,868	-				-0.3
4,509,905	+				+0.0
4,509,913	-				-0.3
4,509,947	-				+0.3
4,509,966	-				+1.8
4,510,041	+				+2.5
4,510,043	-				+1.1
4,510,092	+				+0.8
4,510,102	+				+1.1
4,510,110	-				-0.2
4,510,186	+				+2.2
4,510,196	+				-1.4
4,510,204	-				+2.3
4,510,204	-				+0.1
4,510,206	+				-0.3
4,510,206	+				+2.2
4,510,206	+				+2.1
4,510,206	+				+0.5
4,510,206	+				-3.5
4,510,206	+				+0.6
4,510,206	+				-0.3
4,510,207	-				-0.7
4,510,214	-				-0.3
4,510,214	-				+1.5
4,510,214	-				-1.4
4,510,214	-				-0.8
4,510,214	-				+1.2
4,510,214	-				+1.2
4,510,214	-				-1.7
4,510,214	-				-0.3
4,510,296	+		MIT1002_04022	0.18	+2.1
4,510,298	+		MIT1002_04022	0.19	+2.5
4,510,306	+		MIT1002_04022	0.20	+1.0
4,510,308	+		MIT1002_04022	0.20	-0.9
4,510,316	-		MIT1002_04022	0.21	+0.4
4,510,347	+		MIT1002_04022	0.25	+0.7
4,510,349	-		MIT1002_04022	0.25	-2.8
4,510,365	+		MIT1002_04022	0.28	+0.2
4,510,401	+		MIT1002_04022	0.33	-0.0
4,510,403	-		MIT1002_04022	0.33	+0.3
4,510,421	-		MIT1002_04022	0.35	+2.0
4,510,468	-		MIT1002_04022	0.42	-1.1
4,510,468	-		MIT1002_04022	0.42	-0.9
4,510,489	-		MIT1002_04022	0.44	+0.6
4,510,489	-		MIT1002_04022	0.44	+0.0
4,510,501	+		MIT1002_04022	0.46	+0.9
4,510,555	-		MIT1002_04022	0.53	+0.2
4,510,562	-		MIT1002_04022	0.54	+0.4
4,510,571	+		MIT1002_04022	0.56	-1.1
4,510,657	+		MIT1002_04022	0.67	-1.0
4,510,669	+		MIT1002_04022	0.69	-3.2
4,510,695	-		MIT1002_04022	0.73	+0.4
4,510,708	+		MIT1002_04022	0.74	-2.6
4,510,711	-		MIT1002_04022	0.75	+0.9
4,510,750	-		MIT1002_04022	0.80	-0.6
4,510,829	-				-0.1
4,510,851	-				+0.4
4,510,935	+				+1.0
4,510,950	+				+0.6
4,510,965	+				-0.3
4,510,997	+				-0.4
4,511,015	-				+0.4
4,511,048	+				-0.5
4,511,050	-				+0.7
4,511,063	-				+1.0
4,511,086	-				+1.0
4,511,191	+		MIT1002_04023	0.15	+0.1
4,511,273	-		MIT1002_04023	0.21	-2.2
4,511,291	+		MIT1002_04023	0.22	-0.3
4,511,378	+		MIT1002_04023	0.29	+0.8
4,511,378	+		MIT1002_04023	0.29	+0.1
4,511,378	+		MIT1002_04023	0.29	-0.1
4,511,378	+		MIT1002_04023	0.29	-1.7
4,511,386	+		MIT1002_04023	0.29	-0.4
4,511,386	-		MIT1002_04023	0.29	+0.6
4,511,386	-		MIT1002_04023	0.29	+0.9
4,511,391	-		MIT1002_04023	0.29	-0.1
4,511,457	-		MIT1002_04023	0.34	+0.8
4,511,517	-		MIT1002_04023	0.39	-0.8
4,511,574	-		MIT1002_04023	0.43	-0.4
4,511,579	-		MIT1002_04023	0.43	+0.0
4,511,587	-		MIT1002_04023	0.44	-2.2
4,511,618	-		MIT1002_04023	0.46	-1.9
4,511,629	-		MIT1002_04023	0.47	-0.4
4,511,645	+		MIT1002_04023	0.48	-0.9
4,511,645	+		MIT1002_04023	0.48	+1.5
4,511,715	+		MIT1002_04023	0.54	+0.5
4,511,743	+		MIT1002_04023	0.56	-0.6
4,511,746	-		MIT1002_04023	0.56	+1.5
4,511,746	-		MIT1002_04023	0.56	-0.4
4,511,838	-		MIT1002_04023	0.63	+0.2