Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03668

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
4,100,261	+		MIT1002_03667	0.13	-0.4
4,100,391	-		MIT1002_03667	0.40	-0.8
4,100,391	-		MIT1002_03667	0.40	+0.6
4,100,402	+		MIT1002_03667	0.42	-1.3
4,100,413	+		MIT1002_03667	0.44	+1.6
4,100,413	+		MIT1002_03667	0.44	+0.9
4,100,413	+		MIT1002_03667	0.44	-0.1
4,100,421	-		MIT1002_03667	0.46	-0.3
4,100,421	-		MIT1002_03667	0.46	+0.9
4,100,475	-		MIT1002_03667	0.57	-1.5
4,100,477	+		MIT1002_03667	0.57	-0.8
4,100,509	+		MIT1002_03667	0.64	-0.3
4,100,509	+		MIT1002_03667	0.64	+0.9
4,100,509	+		MIT1002_03667	0.64	+0.5
4,100,514	+		MIT1002_03667	0.65	-0.3
4,100,517	-		MIT1002_03667	0.66	-1.7
4,100,522	-		MIT1002_03667	0.67	-0.6
4,100,590	+		MIT1002_03667	0.81	-0.8
4,100,600	-		MIT1002_03667	0.83	-1.1
4,100,655	-				-1.1
4,100,757	+				+2.0
4,100,757	+				-0.5
4,100,762	+				+0.2
4,100,765	-				+0.5
4,100,765	-				+0.2
4,100,788	-				+0.1
4,100,806	+				-0.8
4,100,806	+				+0.8
4,100,806	+				-2.8
4,100,814	-				+0.3
4,100,814	-				-2.1
4,100,814	-				-0.1
4,100,826	-				-1.1
4,100,836	-				-0.3
4,100,836	-				+0.1
4,100,836	-				-0.8
4,100,934	-				-0.0
4,100,935	+				-1.2
4,100,943	-				-1.2
4,100,965	+				+2.1
4,100,965	+				-1.4
4,100,965	+				+1.7
4,100,965	+				-0.7
4,100,965	+				-0.6
4,100,973	-				-0.3
4,100,973	-				-2.2
4,100,973	-				-3.0
4,100,973	-				-0.9
4,101,006	+				-0.3
4,101,006	+				+0.8
4,101,041	+				-0.6
4,101,093	+				-0.1
4,101,235	-				-2.4
4,101,263	+				-0.8
4,101,315	-				-3.0
4,101,357	+		MIT1002_03668	0.13	-1.3
4,101,500	-		MIT1002_03668	0.25	-3.1
4,101,532	+		MIT1002_03668	0.28	-1.1
4,101,534	+		MIT1002_03668	0.28	-3.5
4,101,583	+		MIT1002_03668	0.32	-1.4
4,101,677	+		MIT1002_03668	0.39	+1.7
4,101,690	+		MIT1002_03668	0.40	-1.6
4,101,710	+		MIT1002_03668	0.42	-3.3
4,101,710	+		MIT1002_03668	0.42	-1.2
4,101,710	+		MIT1002_03668	0.42	-1.2
4,101,731	+		MIT1002_03668	0.44	-2.1
4,101,824	+		MIT1002_03668	0.51	-1.4
4,101,839	-		MIT1002_03668	0.52	-0.9
4,101,863	-		MIT1002_03668	0.54	-2.0
4,101,880	+		MIT1002_03668	0.56	-1.3
4,101,887	-		MIT1002_03668	0.56	-1.5
4,101,957	-		MIT1002_03668	0.62	-0.8
4,101,984	-		MIT1002_03668	0.64	-1.5
4,102,044	+		MIT1002_03668	0.69	-1.7
4,102,071	-		MIT1002_03668	0.71	-2.1
4,102,114	+		MIT1002_03668	0.75	-1.3
4,102,117	+		MIT1002_03668	0.75	-1.8
4,102,131	-		MIT1002_03668	0.76	+0.1
4,102,131	-		MIT1002_03668	0.76	-1.7
4,102,149	-		MIT1002_03668	0.77	-1.2
4,102,311	+				-1.7
4,102,311	+				-1.8
4,102,329	+				-1.5
4,102,351	+				-1.1
4,102,370	+				-0.1
4,102,370	+				-1.6
4,102,370	+				+0.5
4,102,370	+				-2.7
4,102,378	-				-0.8
4,102,378	-				-0.4
4,102,378	-				-2.9
4,102,378	-				-1.7
4,102,459	+				+1.2
4,102,534	-				+0.8
4,102,826	+		MIT1002_03669	0.71	-1.6
4,102,826	+		MIT1002_03669	0.71	-3.5
4,102,834	-		MIT1002_03669	0.73	-2.0
4,102,860	-		MIT1002_03669	0.81	-1.3
4,102,883	-		MIT1002_03669	0.88	-2.5
4,102,885	+		MIT1002_03669	0.89	-1.2
4,102,885	+		MIT1002_03669	0.89	-1.0
4,102,888	-		MIT1002_03669	0.89	-1.7
4,102,893	-				-1.8
4,102,893	-				+0.0
4,102,893	-				-2.3
4,102,932	-				+0.1
4,102,999	+				+0.5
4,102,999	+				+0.4
4,102,999	+				+0.2
4,102,999	+				-1.1
4,103,007	-				+0.1
4,103,007	-				+1.0
4,103,007	-				-1.0
4,103,007	-				-0.5
4,103,007	-				-0.0
4,103,112	+				-0.0
4,103,184	+		MIT1002_03670	0.11	-0.1
4,103,192	-		MIT1002_03670	0.12	-0.5
4,103,263	+		MIT1002_03670	0.20	+1.6
4,103,293	-		MIT1002_03670	0.24	+0.3
4,103,295	+		MIT1002_03670	0.24	+0.3
4,103,349	+		MIT1002_03670	0.30	-0.8