Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03527

Experiment: monoculture; Experiment A, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 4
3,944,481	-		MIT1002_03525	0.83	+0.3
3,944,481	-		MIT1002_03525	0.83	+0.1
3,944,481	-		MIT1002_03525	0.83	+0.0
3,944,481	-		MIT1002_03525	0.83	-0.1
3,944,513	+		MIT1002_03525	0.88	-0.5
3,944,513	+		MIT1002_03525	0.88	+0.4
3,944,513	+		MIT1002_03525	0.88	-0.5
3,944,521	-		MIT1002_03525	0.89	-1.6
3,944,521	-		MIT1002_03525	0.89	-0.2
3,944,521	-		MIT1002_03525	0.89	+0.7
3,944,610	-				+10.8
3,944,615	-				-0.7
3,944,615	-				+1.2
3,944,621	+				+0.1
3,944,654	+				+0.8
3,944,662	-		MIT1002_03526	0.11	+0.1
3,944,713	+		MIT1002_03526	0.19	-0.2
3,944,721	+		MIT1002_03526	0.20	-2.1
3,944,729	-		MIT1002_03526	0.22	+1.6
3,944,729	-		MIT1002_03526	0.22	+0.7
3,944,853	+		MIT1002_03526	0.41	-1.0
3,944,925	-		MIT1002_03526	0.53	+0.4
3,945,021	+		MIT1002_03526	0.68	+1.7
3,945,035	+		MIT1002_03526	0.70	-0.2
3,945,037	+		MIT1002_03526	0.71	+0.3
3,945,116	+		MIT1002_03526	0.83	+1.9
3,945,155	-		MIT1002_03526	0.89	-1.4
3,945,172	+				-1.2
3,945,386	+				+0.8
3,945,407	+				-0.7
3,945,410	+				+1.6
3,945,449	-				+0.9
3,945,542	+				+2.2
3,945,563	-				-0.3
3,945,612	-				+1.6
3,945,625	-				-1.8
3,945,668	+				-0.1
3,945,709	+				+0.1
3,945,717	-				+1.4
3,945,760	+		MIT1002_03527	0.12	+0.6
3,945,798	-		MIT1002_03527	0.13	+0.5
3,945,855	-		MIT1002_03527	0.15	+0.2
3,945,887	+		MIT1002_03527	0.17	+1.6
3,945,895	-		MIT1002_03527	0.17	+1.6
3,945,925	+		MIT1002_03527	0.18	-0.9
3,945,958	+		MIT1002_03527	0.20	-0.0
3,945,970	+		MIT1002_03527	0.20	-0.9
3,945,998	+		MIT1002_03527	0.21	+1.4
3,945,999	-		MIT1002_03527	0.21	-1.6
3,946,006	-		MIT1002_03527	0.22	+1.4
3,946,022	-		MIT1002_03527	0.22	-0.7
3,946,056	-		MIT1002_03527	0.24	-0.2
3,946,091	-		MIT1002_03527	0.25	+0.5
3,946,122	-		MIT1002_03527	0.26	+0.2
3,946,127	-		MIT1002_03527	0.27	+1.6
3,946,162	+		MIT1002_03527	0.28	-0.8
3,946,174	+		MIT1002_03527	0.29	+0.3
3,946,234	+		MIT1002_03527	0.31	+1.1
3,946,234	-		MIT1002_03527	0.31	+0.3
3,946,280	+		MIT1002_03527	0.33	-1.3
3,946,303	-		MIT1002_03527	0.34	+0.9
3,946,370	+		MIT1002_03527	0.37	-1.8
3,946,377	+		MIT1002_03527	0.37	+0.2
3,946,387	+		MIT1002_03527	0.37	+1.8
3,946,395	-		MIT1002_03527	0.38	-0.2
3,946,395	-		MIT1002_03527	0.38	-0.1
3,946,406	-		MIT1002_03527	0.38	-2.8
3,946,440	+		MIT1002_03527	0.39	+0.2
3,946,440	+		MIT1002_03527	0.39	-0.4
3,946,440	+		MIT1002_03527	0.39	+1.1
3,946,440	+		MIT1002_03527	0.39	-0.5
3,946,440	+		MIT1002_03527	0.39	-0.4
3,946,448	-		MIT1002_03527	0.40	+1.2
3,946,448	-		MIT1002_03527	0.40	+1.1
3,946,448	-		MIT1002_03527	0.40	+2.2
3,946,448	-		MIT1002_03527	0.40	-0.3
3,946,448	-		MIT1002_03527	0.40	-0.0
3,946,535	+		MIT1002_03527	0.43	+0.7
3,946,548	-		MIT1002_03527	0.44	+2.1
3,946,548	-		MIT1002_03527	0.44	-0.5
3,946,594	+		MIT1002_03527	0.46	+0.5
3,946,677	-		MIT1002_03527	0.49	+1.4
3,946,691	+		MIT1002_03527	0.50	-0.3
3,946,718	-		MIT1002_03527	0.51	-0.2
3,946,748	+		MIT1002_03527	0.52	+1.4
3,946,756	+		MIT1002_03527	0.52	+0.7
3,946,783	+		MIT1002_03527	0.53	+1.6
3,946,802	+		MIT1002_03527	0.54	+1.7
3,946,805	-		MIT1002_03527	0.54	-0.2
3,946,810	-		MIT1002_03527	0.54	-0.3
3,946,810	-		MIT1002_03527	0.54	-0.5
3,946,828	+		MIT1002_03527	0.55	+0.6
3,946,884	-		MIT1002_03527	0.58	+1.4
3,947,034	+		MIT1002_03527	0.64	+0.4
3,947,135	-		MIT1002_03527	0.68	+1.5
3,947,176	-		MIT1002_03527	0.69	-0.3
3,947,183	+		MIT1002_03527	0.70	+0.4
3,947,260	+		MIT1002_03527	0.73	-0.1
3,947,294	-		MIT1002_03527	0.74	+1.5
3,947,468	+		MIT1002_03527	0.81	-1.3
3,947,496	-		MIT1002_03527	0.83	-0.7
3,947,501	+		MIT1002_03527	0.83	-0.4
3,947,537	+		MIT1002_03527	0.84	-1.2
3,947,589	-		MIT1002_03527	0.86	+1.9
3,947,589	-		MIT1002_03527	0.86	-0.3
3,947,612	+		MIT1002_03527	0.87	-0.2
3,947,612	+		MIT1002_03527	0.87	+0.5
3,947,620	-		MIT1002_03527	0.88	-0.1
3,947,624	+		MIT1002_03527	0.88	+1.1
3,947,630	-		MIT1002_03527	0.88	-2.4
3,947,701	+				-1.3
3,947,701	+				-0.0
3,947,707	+				-1.4
3,947,709	-				+0.8
3,947,717	-				-0.4
3,947,770	-				-1.0
3,947,770	-				+0.1
3,947,863	-				-2.7
3,947,872	-				-0.4
3,947,984	-				+0.2
3,948,144	+				+0.7
3,948,152	-				+1.1
3,948,222	+		MIT1002_03528	0.14	+1.5
3,948,230	-		MIT1002_03528	0.15	-0.2
3,948,230	-		MIT1002_03528	0.15	+0.9
3,948,232	-		MIT1002_03528	0.16	+0.2
3,948,285	+		MIT1002_03528	0.25	+0.7
3,948,327	-		MIT1002_03528	0.33	+0.3
3,948,328	+		MIT1002_03528	0.33	-0.3
3,948,333	+		MIT1002_03528	0.34	+0.3
3,948,341	-		MIT1002_03528	0.36	-0.2
3,948,534	+		MIT1002_03528	0.71	-0.5
3,948,559	-		MIT1002_03528	0.76	-2.0
3,948,579	+		MIT1002_03528	0.80	+1.0
3,948,603	+		MIT1002_03528	0.84	+0.9
3,948,722	+				-0.6
3,948,722	+				-0.5
3,948,769	-				-1.6
3,948,879	-		MIT1002_03529	0.13	-0.3
3,948,893	+		MIT1002_03529	0.15	+0.1
3,948,906	-		MIT1002_03529	0.17	-2.5
3,948,906	-		MIT1002_03529	0.17	-0.6
3,948,920	-		MIT1002_03529	0.20	-1.5